1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g113100.3.1

Solyc03g113100.3.1 (ATUBC2, UBC2, Solyc03g113100)


Aliases : ATUBC2, UBC2, Solyc03g113100

Description : ubiquitin-conjugating E2 protein


Gene families : OG0001764 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001764_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g113100.3.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AT2G02760 ATUBC2, UBC2 ubiquiting-conjugating enzyme 2 0.03 OrthoFinder output from all 47 species
Adi_g019867 ATUBC1, UBC1 E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.02 OrthoFinder output from all 47 species
Adi_g047476 ATUBC1, UBC1 E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene61687.t2 ATUBC1, UBC1,... E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.07G043600.1 ATUBC1, UBC1,... E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.03 OrthoFinder output from all 47 species
Cre06.g294850 ATUBC1, UBC1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dac_g03004 ATUBC1, UBC1 E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.03 OrthoFinder output from all 47 species
Dac_g24126 ATUBC1, UBC1 E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.03 OrthoFinder output from all 47 species
Dac_g26488 ATUBC1, UBC1 E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.03 OrthoFinder output from all 47 species
LOC_Os03g57790.1 ATUBC2, UBC2,... ubiquitin-conjugating E2 protein 0.03 OrthoFinder output from all 47 species
MA_16089g0010 ATUBC2, UBC2 ubiquitin-conjugating E2 protein 0.02 OrthoFinder output from all 47 species
Mp8g17960.1 ATUBC1, UBC1 ubiquitin-conjugating E2 protein 0.02 OrthoFinder output from all 47 species
Ore_g13697 ATUBC1, UBC1 E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g34029 ATUBC1, UBC1 E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006114 ATUBC1, UBC1 E2 ubiquitin-conjugating enzyme *(UBC1) & original... 0.04 OrthoFinder output from all 47 species
Tin_g05799 ATUBC1, UBC1 E2 ubiquiTin-conjugaTing enzyme *(UBC1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e011475_P001 ATUBC2, UBC2,... ubiquitin-conjugating E2 protein 0.03 OrthoFinder output from all 47 species
Zm00001e032886_P001 ATUBC2, UBC2,... ubiquitin-conjugating E2 protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 8 144
No external refs found!