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  5. Solyc03g112560.4.1

Solyc03g112560.4.1 (Solyc03g112560)


Aliases : Solyc03g112560

Description : Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana (sp|q9m8m3|pp136_arath : 540.0)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g112560.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00205450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g25210,... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
AMTR_s00096p00019400 No alias Pentatricopeptide repeat-containing protein At5g11310,... 0.04 OrthoFinder output from all 47 species
AMTR_s00142p00073110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
AT1G02420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
AT1G52640 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 OrthoFinder output from all 47 species
AT1G74900 OTP43 Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G49730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G60050 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G61360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g03187 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g28200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26096 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63892.t1 Aspi01Gene63892 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63899.t1 Aspi01Gene63899 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01694 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g04707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17496 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013390001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
GSVIVT01029740001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.04 OrthoFinder output from all 47 species
Gb_10944 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 OrthoFinder output from all 47 species
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 OrthoFinder output from all 47 species
Gb_12874 No alias Pentatricopeptide repeat-containing protein At3g61360... 0.02 OrthoFinder output from all 47 species
Gb_12910 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.02 OrthoFinder output from all 47 species
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
Gb_20376 No alias group-II intron mitochondrial splicing factor (MISF68) 0.02 OrthoFinder output from all 47 species
Gb_22860 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.05 OrthoFinder output from all 47 species
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g51840.1 LOC_Os03g51840 Pentatricopeptide repeat-containing protein At3g49730... 0.04 OrthoFinder output from all 47 species
LOC_Os05g28720.1 LOC_Os05g28720 Pentatricopeptide repeat-containing protein At3g62470,... 0.02 OrthoFinder output from all 47 species
Len_g08185 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10430437g0020 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
MA_10433557g0010 No alias Pentatricopeptide repeat-containing protein At2g27800,... 0.03 OrthoFinder output from all 47 species
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 OrthoFinder output from all 47 species
MA_38485g0010 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.04 OrthoFinder output from all 47 species
Mp2g09100.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 OrthoFinder output from all 47 species
Pir_g17290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g081950.4.1 Solyc04g081950 Pentatricopeptide repeat-containing protein At1g20300,... 0.03 OrthoFinder output from all 47 species
Solyc11g071670.2.1 Solyc11g071670 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Tin_g09961 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005655_P001 Zm00001e005655 Pentatricopeptide repeat-containing protein At3g22670,... 0.02 OrthoFinder output from all 47 species
Zm00001e013118_P001 Zm00001e013118 Pentatricopeptide repeat-containing protein At3g61360... 0.04 OrthoFinder output from all 47 species
Zm00001e021940_P001 Zm00001e021940 Pentatricopeptide repeat-containing protein At5g18390,... 0.02 OrthoFinder output from all 47 species
Zm00001e036305_P001 Zm00001e036305 Pentatricopeptide repeat-containing protein At3g25210,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 137 165
IPR002885 Pentatricopeptide_repeat 212 240
IPR002885 Pentatricopeptide_repeat 418 447
IPR002885 Pentatricopeptide_repeat 242 288
IPR002885 Pentatricopeptide_repeat 312 358
No external refs found!