Solyc03g112350.4.1 (Solyc03g112350)

Aliases : Solyc03g112350

Description : pre-mRNA splicing regulator (DDX5)

Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g112350.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00096p00079870	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
AT3G06480	No alias	DEAD box RNA helicase family protein	0.08	OrthoFinder output from all 47 species
Adi_g020036	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g024667	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.04	OrthoFinder output from all 47 species
Adi_g036389	ATDRH1, DRH1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g074120	ATDRH1, DRH1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g14759	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g15083	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.02	OrthoFinder output from all 47 species
Als_g18220	ATDRH1, DRH1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g22206	ATDRH1, DRH1	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Als_g33054	ATDRH1, DRH1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g15097	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.03	OrthoFinder output from all 47 species
Azfi_s0020.g015531	ATDRH1, DRH1	not classified & original description: CDS=33-2831	0.04	OrthoFinder output from all 47 species
Azfi_s0022.g016084	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.03	OrthoFinder output from all 47 species
Cba_g10365	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g68173	ATDRH1, DRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.21G038500.1	Ceric.21G038500	regulatory RNA helicase *(RH20/RH30) of virus...	0.02	OrthoFinder output from all 47 species
Ceric.27G030300.1	ATDRH1, DRH1,...	not classified & original description: pacid=50605657...	0.03	OrthoFinder output from all 47 species
Dac_g12670	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.03	OrthoFinder output from all 47 species
Dcu_g10539	ATDRH1, DRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g25686	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.04	OrthoFinder output from all 47 species
Dcu_g41933	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.03	OrthoFinder output from all 47 species
Dde_g17414	ATDRH1, DRH1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g17995	ATDRH1, DRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g20062	ATDRH1, DRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os01g10050.2	LOC_Os01g10050	pre-mRNA splicing regulator (DDX5)	0.03	OrthoFinder output from all 47 species
LOC_Os01g36860.1	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species
LOC_Os11g46240.1	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Len_g14109	ATDRH1, DRH1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g51090	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.03	OrthoFinder output from all 47 species
Lfl_g05034	ATDRH1, DRH1	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g13618	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.02	OrthoFinder output from all 47 species
Lfl_g39840	ATDRH1, DRH1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g02786	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g08678	ATDRH1, DRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g19068	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.06	OrthoFinder output from all 47 species
Pir_g15938	ATDRH1, DRH1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g45674	ATDRH1, DRH1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g10603	No alias	regulatory RNA helicase *(RH20/RH30) of virus...	0.03	OrthoFinder output from all 47 species
Pnu_g12189	ATDRH1, DRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g14840	ATDRH1, DRH1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0077.g017597	ATDRH1, DRH1	not classified & original description: CDS=159-3038	0.03	OrthoFinder output from all 47 species
Sam_g29066	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e011376_P001	Zm00001e011376	ATP-dependent RNA helicase-like protein DB10...	0.06	OrthoFinder output from all 47 species
Zm00001e016546_P001	Zm00001e016546	pre-mRNA splicing regulator (DDX5)	0.03	OrthoFinder output from all 47 species
Zm00001e020727_P006	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa...	0.06	OrthoFinder output from all 47 species
Zm00001e020972_P005	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e027719_P003	ATDRH1, DRH1,...	DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	460	570
IPR011545	DEAD/DEAH_box_helicase_dom	254	424

External Links

No external refs found!

Solyc03g112350.4.1 (Solyc03g112350)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation