Solyc03g112150.1.1 (ATRAB8D, ATRABE1B,...)

Aliases : ATRAB8D, ATRABE1B, RABE1b, Solyc03g112150

Description : EF-Tu translation elongation factor

Gene families : OG0001305 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g112150.1.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00227880	ATRAB8D,...	Protein biosynthesis.organelle translation...	0.1	OrthoFinder output from all 47 species
AT4G20360	ATRAB8D, ATRABE1B, RABE1b	RAB GTPase homolog E1B	0.11	OrthoFinder output from all 47 species
Adi_g075285	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Aev_g21041	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.07	OrthoFinder output from all 47 species
Aev_g27656	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Ala_g04793	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Als_g08146	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.07	OrthoFinder output from all 47 species
Als_g08147	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Als_g09356	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Als_g23756	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Aob_g15070	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.07	OrthoFinder output from all 47 species
Aop_g10494	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Aop_g25435	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene10728.t1	ATRAB8D,...	translation elongation factor *(EF-Tu) & original...	0.05	OrthoFinder output from all 47 species
Azfi_s0401.g068265	No alias	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Cba_g22191	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Cba_g70878	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.02	OrthoFinder output from all 47 species
Ceric.10G078000.1	ATRAB8D,...	translation elongation factor *(EF-Tu) & original...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.40	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Dac_g08520	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Dcu_g08765	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Dde_g18792	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.06	OrthoFinder output from all 47 species
Ehy_g09796	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01007638001	ATRAB8D, ATRABE1B, RABE1b	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
Gb_29040	ATRAB8D, ATRABE1B, RABE1b	EF-Tu translation elongation factor	0.08	OrthoFinder output from all 47 species
LOC_Os02g38210.1	ATRAB8D,...	EF-Tu translation elongation factor	0.07	OrthoFinder output from all 47 species
Len_g22333	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.05	OrthoFinder output from all 47 species
Len_g22334	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Len_g31034	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Len_g39684	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.08	OrthoFinder output from all 47 species
Len_g41947	ATRAB8D, ATRABE1B, RABE1b	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g06070	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
MA_942991g0010	ATRAB8D, ATRABE1B, RABE1b	EF-Tu translation elongation factor	0.06	OrthoFinder output from all 47 species
Mp1g03870.1	ATRAB8D, ATRABE1B, RABE1b	EF-Tu translation elongation factor	0.12	OrthoFinder output from all 47 species
Msp_g11454	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.07	OrthoFinder output from all 47 species
Nbi_g14071	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Pp3c1_38670V3.1	ATRAB8D,...	RAB GTPase homolog E1B	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015523	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.04	OrthoFinder output from all 47 species
Sam_g07638	No alias	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Spa_g10864	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Spa_g10865	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Spa_g22996	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.03	OrthoFinder output from all 47 species
Spa_g50677	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.05	OrthoFinder output from all 47 species
Tin_g05984	ATRAB8D, ATRABE1B, RABE1b	translation elongation factor *(EF-Tu) & original...	0.06	OrthoFinder output from all 47 species
Zm00001e015008_P001	ATRAB8D,...	EF-Tu translation elongation factor	0.04	OrthoFinder output from all 47 species
Zm00001e022880_P001	ATRAB8D,...	EF-Tu translation elongation factor	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004160	Transl_elong_EFTu/EF1A_C	376	475
IPR000795	T_Tr_GTP-bd_dom	78	279
IPR004161	EFTu-like_2	303	371

External Links

No external refs found!

Solyc03g112150.1.1 (ATRAB8D, ATRABE1B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation