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  5. Solyc03g111590.4.1

Solyc03g111590.4.1 (REF6, Solyc03g111590)


Aliases : REF6, Solyc03g111590

Description : histone demethylase (PKDM9). transcription factor (JUMONJI)


Gene families : OG0004407 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004407_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g111590.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00114640 ELF6,... RNA biosynthesis.transcriptional activation.JUMONJI... 0.04 OrthoFinder output from all 47 species
AMTR_s00049p00181100 REF6,... RNA biosynthesis.transcriptional activation.JUMONJI... 0.05 OrthoFinder output from all 47 species
AT3G48430 REF6 relative of early flowering 6 0.07 OrthoFinder output from all 47 species
Ala_g07663 ELF6 histone demethylase *(PKDM9) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16153 ELF6 histone demethylase *(PKDM9) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene32477.t1 REF6, Aspi01Gene32477 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g17605 ELF6 histone demethylase *(PKDM9) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39866 ELF6 histone demethylase *(PKDM9) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007564001 REF6 RNA biosynthesis.transcriptional activation.JUMONJI... 0.06 OrthoFinder output from all 47 species
LOC_Os03g05680.1 ELF6, LOC_Os03g05680 transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
LOC_Os12g18150.1 REF6, LOC_Os12g18150 histone demethylase (PKDM9). transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
Msp_g25734 ELF6 histone demethylase *(PKDM9) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18890 ELF6 histone demethylase *(PKDM9) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g41385 ELF6 histone demethylase *(PKDM9) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028534_P001 REF6, Zm00001e028534 histone demethylase (PKDM9). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Zm00001e038984_P001 ELF6, Zm00001e038984 histone demethylase (PKDM9). transcription factor (JUMONJI) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Dcu_g19524
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 217 335
IPR003349 JmjN 21 54
No external refs found!