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  5. Solyc03g111390.4.1

Solyc03g111390.4.1 (Solyc03g111390)


Aliases : Solyc03g111390

Description : tRNA wybutosine-synthesizing protein 2/3/4 OS=Arabidopsis thaliana (sp|q8w4k1|tyw23_arath : 82.4)


Gene families : OG0006308 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006308_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g111390.4.1

Target Alias Description ECC score Gene Family Method Actions
AT5G50310 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g001608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19429 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0188.g056788 No alias not classified & original description: CDS=169-2181 0.04 OrthoFinder output from all 47 species
Dac_g32564 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g12046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007548001 No alias No description available 0.08 OrthoFinder output from all 47 species
LOC_Os04g40740.1 LOC_Os04g40740 Epithiospecifier protein OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Mp1g22040.1 No alias tRNA wybutosine-synthesizing protein 2/3/4... 0.02 OrthoFinder output from all 47 species
Ppi_g08364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16567 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g16569 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo235261 No alias tRNA wybutosine-synthesizing protein 2/3/4... 0.05 OrthoFinder output from all 47 species
Spa_g18179 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007777_P003 Zm00001e007777 Acyl-CoA-binding domain-containing protein 4... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025183 DUF4110 580 664
No external refs found!