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  5. LOC_Os10g39460

LOC_Os10g39460 (Os10g0540100)


Aliases : Os10g0540100

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os10g39460
Cluster HCCA cluster: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AT3G14330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
GSVIVT01031251001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os01g10800 Os01g0205200 No description available 0.02 Gene family
Smo113567 PACid_15417087 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo74842 PACid_15412946 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc03g063380.2.1 Solyc03g063380.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc04g051490.3.1 Solyc04g051490.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d028587 GRMZM5G836424 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d043068 GRMZM2G399433 No description available 0.02 Gene family
Zm00001d048451 GRMZM2G171994 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 274 310
IPR002885 Pentatricopeptide_repeat 374 421
IPR002885 Pentatricopeptide_repeat 245 273
IPR002885 Pentatricopeptide_repeat 145 172
IPR002885 Pentatricopeptide_repeat 76 98
IPR002885 Pentatricopeptide_repeat 449 474
IPR002885 Pentatricopeptide_repeat 175 205
IPR032867 DYW_dom 547 671
No external refs found!