Solyc03g096360.4.1 (Solyc03g096360)

Aliases : Solyc03g096360

Description : component RPL35a of LSU proteome component

Gene families : OG0000881 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000881_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g096360.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00195890	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT1G07070	No alias	Ribosomal protein L35Ae family protein	0.09	OrthoFinder output from all 47 species
AT1G41880	No alias	Ribosomal protein L35Ae family protein	0.15	OrthoFinder output from all 47 species
AT1G74270	No alias	Ribosomal protein L35Ae family protein	0.1	OrthoFinder output from all 47 species
AT3G55750	No alias	Ribosomal protein L35Ae family protein	0.05	OrthoFinder output from all 47 species
Adi_g107650	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g126470	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g22035	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ala_g23556	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Aop_g28942	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g32442	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Aop_g56103	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0006.g009856	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0048.g030566	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g08233	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g57892	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020723.23	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	OrthoFinder output from all 47 species
Cre10.g459250	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Dac_g01908	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Dac_g27352	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dac_g28494	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dac_g41166	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g24788	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g28089	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g04105	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ehy_g04236	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01016386001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	OrthoFinder output from all 47 species
GSVIVT01034025001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	OrthoFinder output from all 47 species
Gb_35488	No alias	component RPL35a of LSU proteome component	0.14	OrthoFinder output from all 47 species
LOC_Os02g54470.1	LOC_Os02g54470	component RPL35a of LSU proteome component	0.14	OrthoFinder output from all 47 species
Len_g35522	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g11760	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g20396	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g20427	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g29504	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
MA_79041g0010	No alias	component RPL35a of LSU proteome component	0.06	OrthoFinder output from all 47 species
Mp1g11470.1	No alias	component RPL35a of LSU proteome component	0.15	OrthoFinder output from all 47 species
Msp_g02611	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Msp_g36862	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Msp_g38265	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g03777	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c11_9630V3.1	Pp3c11_9630	Ribosomal protein L35Ae family protein	0.07	OrthoFinder output from all 47 species
Pp3c3_3480V3.1	Pp3c3_3480	Ribosomal protein L35Ae family protein	0.11	OrthoFinder output from all 47 species
Pp3c4_29970V3.1	Pp3c4_29970	Ribosomal protein L35Ae family protein	0.04	OrthoFinder output from all 47 species
Ppi_g13400	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004691	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0278.g027080	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Sam_g05626	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g06981	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g21165	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Sam_g24989	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g38788	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g42222	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Smo184773	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Spa_g05815	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Spa_g43199	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Tin_g02369	No alias	component *(eL33) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Zm00001e009729_P001	Zm00001e009729	component RPL35a of LSU proteome component	0.21	OrthoFinder output from all 47 species
Zm00001e023741_P003	Zm00001e023741	component RPL35a of LSU proteome component	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001780	Ribosomal_L35A	12	99

External Links

No external refs found!

Solyc03g096360.4.1 (Solyc03g096360)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation