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Aliases : ATSMC2, Solyc03g093260
Description : component CAP-E2/SMC2 of condensin I/II complex
Gene families : OG0005512 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005512_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc03g093260.3.1 | |
| Cluster | HCCA: Cluster_21 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00029p00193070 | ATSMC2,... | Cell cycle.mitosis and meiosis.chromatin... | 0.17 | OrthoFinder output from all 47 species | |
| AT3G47460 | ATSMC2 | Structural maintenance of chromosomes (SMC) family protein | 0.11 | OrthoFinder output from all 47 species | |
| AT5G62410 | TTN3, ATSMC4,... | structural maintenance of chromosomes 2 | 0.14 | OrthoFinder output from all 47 species | |
| Adi_g078006 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g117141 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g40103 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g23199 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Als_g01195 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.09 | OrthoFinder output from all 47 species | |
| Aop_g05581 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.1 | OrthoFinder output from all 47 species | |
| Aspi01Gene72499.t1 | ATSMC2, Aspi01Gene72499 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.07 | OrthoFinder output from all 47 species | |
| Azfi_s0003.g007776 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.12G044400.1 | ATSMC2, Ceric.12G044400 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.14 | OrthoFinder output from all 47 species | |
| Ceric.15G020500.1 | ATSMC2, Ceric.15G020500 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.16 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000615.55 | TTN3, ATSMC4,... | Cell cycle.mitosis and meiosis.chromatin... | 0.07 | OrthoFinder output from all 47 species | |
| Cre02.g086650 | ATSMC2 | Cell cycle.mitosis and meiosis.chromatin... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g14763 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g03186 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.14 | OrthoFinder output from all 47 species | |
| GSVIVT01018715001 | ATSMC2 | Cell cycle.mitosis and meiosis.chromatin... | 0.1 | OrthoFinder output from all 47 species | |
| Gb_17843 | ATSMC2 | component CAP-E2/SMC2 of condensin I/II complex | 0.15 | OrthoFinder output from all 47 species | |
| LOC_Os01g67740.1 | ATSMC2, LOC_Os01g67740 | component CAP-E2/SMC2 of condensin I/II complex | 0.08 | OrthoFinder output from all 47 species | |
| Len_g12256 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g37430 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.09 | OrthoFinder output from all 47 species | |
| MA_15346g0010 | ATSMC2 | component CAP-E2/SMC2 of condensin I/II complex | 0.08 | OrthoFinder output from all 47 species | |
| Mp1g04330.1 | ATSMC2 | component CAP-E2/SMC2 of condensin I/II complex | 0.13 | OrthoFinder output from all 47 species | |
| Msp_g14469 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.07 | OrthoFinder output from all 47 species | |
| Nbi_g02470 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.1 | OrthoFinder output from all 47 species | |
| Ppi_g29913 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0004.g002205 | ATSMC2 | not classified & original description: CDS=1309-2196 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0197.g025517 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.07 | OrthoFinder output from all 47 species | |
| Sam_g14601 | No alias | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Smo137981 | ATSMC2 | Cell cycle.mitosis and meiosis.chromatin... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g41237 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g10631 | ATSMC2 | component *(CAP-E2/SMC2) of condensin I/II complex &... | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e018930_P001 | ATSMC2, Zm00001e018930 | component CAP-E2/SMC2 of condensin I/II complex | 0.15 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003896 | DNA primase activity | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004519 | endonuclease activity | IEP | HCCA |
| MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005694 | chromosome | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006269 | DNA replication, synthesis of RNA primer | IEP | HCCA |
| BP | GO:0006270 | DNA replication initiation | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| BP | GO:0007059 | chromosome segregation | IEP | HCCA |
| MF | GO:0008017 | microtubule binding | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| MF | GO:0015631 | tubulin binding | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | HCCA |
| MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0022402 | cell cycle process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0051301 | cell division | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003395 | RecF/RecN/SMC_N | 253 | 538 |
| No external refs found! |