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  5. Solyc03g083410.3.1

Solyc03g083410.3.1 (ATX4, SDG16, Solyc03g083410)


Aliases : ATX4, SDG16, Solyc03g083410

Description : class III/Trithorax histone methyltransferase component of histone lysine methylation/demethylation


Gene families : OG0000660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000660_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g083410.3.1

Target Alias Description ECC score Gene Family Method Actions
AT5G42400 SDG25, ATXR7 SET domain protein 25 0.04 OrthoFinder output from all 47 species
Ala_g07772 SDG25, ATXR7 EC_2.1 transferase transferring one-carbon group &... 0.06 OrthoFinder output from all 47 species
Ala_g11407 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Aob_g23333 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Aob_g29752 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aop_g06246 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aop_g19017 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0020.g015423 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.06 OrthoFinder output from all 47 species
Cba_g57811 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Ceric.01G107400.1 ATX4, SDG16,... class-III histone methyltransferase *(Trx) & original... 0.1 OrthoFinder output from all 47 species
Ceric.32G012900.1 SDG25, ATXR7,... EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species
Cre09.g395584 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre11.g475950 SDG25, ATXR7 Histone-lysine N-methyltransferase ATXR7 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g07171 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.07 OrthoFinder output from all 47 species
Dcu_g08323 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g09379 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.06 OrthoFinder output from all 47 species
Ehy_g07955 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01027118001 ATX4, SDG16 Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
GSVIVT01038708001 ATX4, SDG16 Chromatin organisation.histone modifications.histone... 0.06 OrthoFinder output from all 47 species
LOC_Os01g46700.1 ATX4, SDG16,... class III/Trithorax histone methyltransferase component... 0.07 OrthoFinder output from all 47 species
Len_g23260 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g17819 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
MA_10435027g0010 ATX4, SDG16 Histone-lysine N-methyltransferase ATX4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_908464g0010 ATX4, SDG16 Histone-lysine N-methyltransferase ATX4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp1g17790.1 SDG25, ATXR7 class III/Trithorax histone methyltransferase component... 0.04 OrthoFinder output from all 47 species
Mp4g21720.1 ATX4, SDG16 class III/Trithorax histone methyltransferase component... 0.07 OrthoFinder output from all 47 species
Msp_g14383 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Ore_g05016 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Ore_g34239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g37084 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Pir_g13633 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Pir_g41040 ATX4, SDG16 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g09508 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001119 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025555 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Sam_g14051 No alias class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Sam_g14555 No alias class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Smo164635 ATX3, SDG14 Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Spa_g09086 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Spa_g47178 SDG25, ATXR7 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Spa_g55030 ATX3, SDG14 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Tin_g13372 SET29, SDG29, ATX5 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e027986_P003 ATX4, SDG16,... class III/Trithorax histone methyltransferase component... 0.04 OrthoFinder output from all 47 species
Zm00001e039307_P005 SDG25, ATXR7,... class III/Trithorax histone methyltransferase component... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR001214 SET_dom 851 955
IPR000313 PWWP_dom 156 253
IPR019787 Znf_PHD-finger 354 407
No external refs found!