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  5. Solyc03g082970.4.1

Solyc03g082970.4.1 (PDE225, PTAC7, Solyc03g082970)


Aliases : PDE225, PTAC7, Solyc03g082970

Description : TAC7 cofactor of plastid-encoded RNA polymerase


Gene families : OG0006155 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006155_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g082970.4.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT5G24314 PDE225, PTAC7 plastid transcriptionally active7 0.06 OrthoFinder output from all 47 species
Adi_g015526 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.03 OrthoFinder output from all 47 species
Dcu_g13646 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.03 OrthoFinder output from all 47 species
GSVIVT01010322001 PDE225, PTAC7 RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
LOC_Os01g50930.1 PDE225, PTAC7,... TAC7 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
Pp3c22_3530V3.1 Pp3c22_3530 plastid transcriptionally active7 0.02 OrthoFinder output from all 47 species
Sam_g46780 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.02 OrthoFinder output from all 47 species
Smo437596 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Spa_g03374 No alias cofactor of plastid-encoded RNA polymerase *(PAP12/TAC7)... 0.02 OrthoFinder output from all 47 species
Zm00001e028140_P001 PDE225, PTAC7,... TAC7 cofactor of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!