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  5. Solyc03g082380.4.1

Solyc03g082380.4.1 (At-SR34a, SR34a,...)


Aliases : At-SR34a, SR34a, SRp34a, Solyc03g082380

Description : SR30/34 RNA splicing factor


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g082380.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00217480 SR30, ATSRP30,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
AT1G02840 At-SR34, SRP34,... RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 OrthoFinder output from all 47 species
Adi_g012564 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g112402 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05960 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08904 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G080500.1 At-SR34a, SR34a,... RNA splicing factor *(SR30/34) & original description:... 0.03 OrthoFinder output from all 47 species
Cre01.g026450 At-SR34, SRP34,... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Dac_g00635 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g04564 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08553 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os05g30140.1 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.04 OrthoFinder output from all 47 species
Len_g13338 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g48587 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
MA_11621g0010 At-SR34a, SR34a, SRp34a SR30/34 RNA splicing factor 0.04 OrthoFinder output from all 47 species
MA_141465g0010 SR30, ATSRP30, At-SR30 SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Smo97566 SR30, ATSRP30, At-SR30 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Tin_g19153 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e038219_P006 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005956 protein kinase CK2 complex IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902554 serine/threonine protein kinase complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 76
IPR000504 RRM_dom 117 179
No external refs found!