Solyc03g064020.3.1 (RABA4D, ATRABA4D,...)

Aliases : RABA4D, ATRABA4D, Solyc03g064020

Description : A-class RAB GTPase

Gene families : OG0001718 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001718_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g064020.3.1
Cluster	HCCA: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
AT5G65270	AtRABA4a, RABA4a	RAB GTPase homolog A4A	0.08	OrthoFinder output from all 47 species
Adi_g111275	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g02653	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01027396001	RABA3, ATRAB-A3, ATRABA3	Vesicle trafficking.regulation of membrane tethering and...	0.05	OrthoFinder output from all 47 species
Len_g12448	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g28692	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
MA_10428137g0010	AtRABA4a, RABA4a	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Ore_g06187	RABA4D, ATRABA4D	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e000673_P001	AtRABA4a,...	A-class RAB GTPase	0.06	OrthoFinder output from all 47 species
Zm00001e012878_P002	AtRABA4a,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Zm00001e038828_P001	AtRABA4a,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0017025	TBP-class protein binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
MF	GO:0140296	general transcription initiation factor binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	17	177

External Links

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Solyc03g064020.3.1 (RABA4D, ATRABA4D,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation