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Aliases : Solyc03g034200
Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 140.0)
Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00010p00265700 | evm_27.TU.AmTr_v1... | RNA-binding KH domain-containing protein RCF3... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00033p00116200 | evm_27.TU.AmTr_v1... | KH domain-containing protein HEN4 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00092p00116010 | evm_27.TU.AmTr_v1... | KH domain-containing protein At4g18375 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
| AT1G51580 | No alias | RNA-binding KH domain-containing protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G46190 | No alias | RNA-binding KH domain-containing protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g006607 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g008962 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g016415 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g017897 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g022420 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g024339 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g028830 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g040691 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g054729 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g074054 | HEN4 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g075813 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g075983 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g092270 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g106357 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g108369 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g115536 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g128615 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g07964 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g09715 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g15857 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g05589 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g07063 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g08517 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g16566 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g25451 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g04310 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g06633 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g06699 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g17355 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g19887 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g29218 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g62599 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene53189.t1 | Aspi01Gene53189 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene68976.t1 | Aspi01Gene68976 | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0078.g038192 | No alias | not classified & original description: CDS=18-2189 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0280.g062273 | No alias | not classified & original description: CDS=315-2570 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g03276 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g07160 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g07339 | HEN4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g12024 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g12254 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g17642 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g24288 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g71670 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.14G007100.1 | Ceric.14G007100 | not classified & original description: pacid=50632910... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.17G032000.1 | Ceric.17G032000 | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.24G065400.1 | Ceric.24G065400 | not classified & original description: pacid=50629874... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.25G027100.1 | Ceric.25G027100 | not classified & original description: pacid=50594480... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.32G061200.1 | Ceric.32G061200 | not classified & original description: pacid=50597564... | 0.07 | OrthoFinder output from all 47 species | |
| Cre17.g707400 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g09565 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g16018 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g22559 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g07076 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g10791 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g12897 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Dcu_g24061 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g02923 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g10346 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g01553 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g03943 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g07829 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g09896 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g18057 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01009261001 | No alias | RNA-binding KH domain-containing protein RCF3... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01021523001 | No alias | KH domain-containing protein At4g18375 OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01038571001 | No alias | RNA-binding KH domain-containing protein RCF3... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_18830 | No alias | RNA-binding KH domain-containing protein RCF3... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_31686 | No alias | RNA-binding KH domain-containing protein RCF3... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_38220 | No alias | RNA-binding KH domain-containing protein RCF3... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g13470.1 | LOC_Os01g13470 | RNA-binding KH domain-containing protein RCF3... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os06g23460.1 | LOC_Os06g23460 | RNA-binding KH domain-containing protein RCF3... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os08g10030.1 | LOC_Os08g10030 | KH domain-containing protein At4g18375 OS=Arabidopsis... | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os09g32300.1 | LOC_Os09g32300 | KH domain-containing protein HEN4 OS=Arabidopsis... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os10g35220.1 | LOC_Os10g35220 | KH domain-containing protein At4g18375 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g07805 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g03080 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g04773 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g10062 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g21587 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_10429211g0010 | No alias | RNA-binding KH domain-containing protein RCF3... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10430861g0010 | No alias | KH domain-containing protein At4g18375 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| MA_10433640g0010 | No alias | KH domain-containing protein At4g18375 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| MA_12604g0010 | No alias | RNA-binding KH domain-containing protein RCF3... | 0.04 | OrthoFinder output from all 47 species | |
| MA_3715g0020 | No alias | RNA-binding KH domain-containing protein RCF3... | 0.02 | OrthoFinder output from all 47 species | |
| MA_6622g0010 | No alias | KH domain-containing protein At4g18375 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Mp3g04880.1 | No alias | RNA-binding KH domain-containing protein RCF3... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g10485 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Msp_g32267 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g11925 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g03216 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g03833 | No alias | not classified & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Ore_g06520 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g06772 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g09995 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g10011 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g10012 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g15528 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g18548 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ore_g21139 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g21684 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g25271 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g32260 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g40850 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g00616 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g10935 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g26422 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g38350 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g06476 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g12959 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g13999 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.05 | OrthoFinder output from all 47 species | |
| Pnu_g14000 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g01057 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g01260 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g41944 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0020.g008079 | No alias | not classified & original description: CDS=527-2194 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0026.g009457 | No alias | not classified & original description: CDS=528-2219 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0059.g015180 | No alias | E3 ubiquitin ligase *(STUBL1/3) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0069.g016541 | No alias | not classified & original description: CDS=278-2203 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0099.g019575 | No alias | not classified & original description: CDS=226-2445 | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0108.g020404 | No alias | regulatory protein *(RCF3) of HYL1-phosphorylation &... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g08472 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g11931 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g12504 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g15786 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g16383 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g35222 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g08106 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g22547 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g29458 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g39448 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g53383 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Tin_g02804 | No alias | not classified & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Tin_g07199 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g10773 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e001825_P001 | Zm00001e001825 | KH domain-containing protein At4g18375 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e004486_P005 | Zm00001e004486 | KH domain-containing protein At4g18375 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e010096_P002 | Zm00001e010096 | KH domain-containing protein HEN4 OS=Arabidopsis... | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e026127_P004 | Zm00001e026127 | RNA-binding KH domain-containing protein RCF3... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e030716_P002 | Zm00001e030716 | RNA-binding KH domain-containing protein RCF3... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e037033_P001 | Zm00001e037033 | RNA-binding KH domain-containing protein RCF3... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e039986_P003 | Zm00001e039986 | KH domain-containing protein At4g18375 OS=Arabidopsis... | 0.08 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002097 | tRNA wobble base modification | IEP | HCCA |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | HCCA |
| CC | GO:0005730 | nucleolus | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008134 | transcription factor binding | IEP | HCCA |
| MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | HCCA |
| CC | GO:0033588 | elongator holoenzyme complex | IEP | HCCA |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
| No external refs found! |