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  5. LOC_Os03g25990.1

LOC_Os03g25990.1


Description : alpha-class expansin


Gene families : OG_01_0000024 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000024_tree ,
OG_02_0000028 (LandPlants) Phylogenetic Tree(s): OG_02_0000028_tree ,
OG_03_0068984 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g25990.1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00264980 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
AMTR_s00012p00230920 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
AMTR_s00022p00153780 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
AMTR_s00077p00063420 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
AMTR_s00140p00077570 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
AT1G12560 ATEXP7, EXPA7,... expansin A7 0.06 Archaeplastida
AT1G20190 ATEXPA11, ATHEXP... expansin 11 0.04 Archaeplastida
AT1G62980 EXPA18, EXP18,... expansin A18 0.06 Archaeplastida
AT2G28950 EXPA6, ATEXP6,... expansin A6 0.02 Archaeplastida
AT2G37640 ATEXPA3, EXP3,... Barwin-like endoglucanases superfamily protein 0.07 Archaeplastida
AT2G40610 EXPA8, ATHEXP... expansin A8 0.06 Archaeplastida
AT3G29030 EXP5, ATHEXP... expansin A5 0.06 Archaeplastida
AT4G01630 ATHEXP ALPHA... expansin A17 0.04 Archaeplastida
AT5G02260 EXP9, EXPA9,... expansin A9 0.02 Archaeplastida
AT5G05290 EXPA2, ATHEXP... expansin A2 0.03 Archaeplastida
GSVIVT01008762001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01011437001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01016525001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01024572001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.05 Archaeplastida
GSVIVT01024946001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01025509001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
GSVIVT01028215001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01028474001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01029411001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01030191001 No alias Expansin-A8 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01030192001 No alias Expansin-A2 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
GSVIVT01032681001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
GSVIVT01033691001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Gb_01504 No alias alpha-class expansin 0.04 Archaeplastida
Gb_04404 No alias alpha-class expansin 0.03 Archaeplastida
Gb_06127 No alias alpha-class expansin 0.03 Archaeplastida
Gb_06139 No alias alpha-class expansin 0.02 Archaeplastida
Gb_07424 No alias alpha-class expansin 0.02 Archaeplastida
Gb_07439 No alias alpha-class expansin 0.03 Archaeplastida
Gb_09118 No alias alpha-class expansin 0.04 Archaeplastida
Gb_28036 No alias Expansin-A29 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os01g14650.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os01g14660.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os02g16730.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os02g16800.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os03g06020.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os03g06050.1 No alias alpha-class expansin 0.06 Archaeplastida
LOC_Os03g06060.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os03g21820.1 No alias alpha-class expansin 0.07 Archaeplastida
LOC_Os03g31480.1 No alias alpha-class expansin 0.06 Archaeplastida
LOC_Os04g15840.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os05g19570.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os05g19600.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os06g01920.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os06g41700.1 No alias alpha-class expansin 0.03 Archaeplastida
LOC_Os10g30330.1 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os10g30340.1 No alias alpha-class expansin 0.04 Archaeplastida
LOC_Os10g39110.1 No alias alpha-class expansin 0.05 Archaeplastida
MA_10020g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_100868g0010 No alias alpha-class expansin 0.07 Archaeplastida
MA_10299189g0010 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_104065g0020 No alias alpha-class expansin 0.02 Archaeplastida
MA_10429288g0020 No alias Expansin-A2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_114349g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_130258g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_14588g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_18265g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_200461g0010 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.01 Archaeplastida
MA_275115g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_30127g0010 No alias alpha-class expansin 0.05 Archaeplastida
MA_3618g0010 No alias Expansin-A15 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_36587g0010 No alias alpha-class expansin 0.05 Archaeplastida
MA_37884g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_45587g0020 No alias alpha-class expansin 0.02 Archaeplastida
MA_474624g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_4979g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_51645g0010 No alias Expansin-A1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_70880g0010 No alias alpha-class expansin 0.04 Archaeplastida
MA_7218g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_8784268g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_915221g0010 No alias alpha-class expansin 0.02 Archaeplastida
Mp1g22700.1 No alias alpha-class expansin 0.06 Archaeplastida
Mp1g22720.1 No alias Expansin-A4 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Mp1g22730.1 No alias alpha-class expansin 0.04 Archaeplastida
Mp1g22740.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp1g24230.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp1g26350.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp2g18600.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp2g18610.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp3g03890.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g09750.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g09760.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g09770.1 No alias alpha-class expansin 0.04 Archaeplastida
Mp3g10160.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp3g24470.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp4g06560.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp5g01930.1 No alias alpha-class expansin 0.03 Archaeplastida
Mp5g20420.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp8g18860.1 No alias alpha-class expansin 0.03 Archaeplastida
Pp3c11_12000V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c12_4560V3.1 No alias expansin A9 0.04 Archaeplastida
Pp3c13_20360V3.1 No alias expansin A9 0.04 Archaeplastida
Pp3c14_18030V3.1 No alias expansin A14 0.03 Archaeplastida
Pp3c18_19660V3.1 No alias expansin A9 0.02 Archaeplastida
Pp3c18_19720V3.1 No alias expansin A1 0.07 Archaeplastida
Pp3c20_5780V3.1 No alias expansin A15 0.04 Archaeplastida
Pp3c21_1850V3.1 No alias expansin A1 0.03 Archaeplastida
Pp3c21_1940V3.1 No alias expansin A9 0.02 Archaeplastida
Pp3c22_760V3.1 No alias expansin A1 0.03 Archaeplastida
Pp3c24_15400V3.1 No alias expansin A15 0.03 Archaeplastida
Pp3c3_16280V3.1 No alias expansin A14 0.04 Archaeplastida
Pp3c7_12870V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c8_14900V3.1 No alias expansin A14 0.02 Archaeplastida
Pp3c8_870V3.1 No alias expansin A1 0.03 Archaeplastida
Smo143857 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Smo179212 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Smo230202 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Smo409954 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Smo75237 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
Smo78615 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
Smo90935 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.04 Archaeplastida
Solyc03g115300.2.1 No alias alpha-class expansin 0.05 Archaeplastida
Solyc03g115310.1.1 No alias alpha-class expansin 0.04 Archaeplastida
Solyc04g081870.4.1 No alias alpha-class expansin 0.05 Archaeplastida
Solyc05g007830.3.1 No alias alpha-class expansin 0.02 Archaeplastida
Solyc05g052250.3.1 No alias alpha-class expansin 0.07 Archaeplastida
Solyc06g005560.4.1 No alias alpha-class expansin 0.02 Archaeplastida
Solyc06g051800.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc08g007780.3.1 No alias Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Solyc08g080060.4.1 No alias alpha-class expansin 0.05 Archaeplastida
Solyc09g010860.4.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc10g084780.3.1 No alias alpha-class expansin 0.05 Archaeplastida
Solyc12g089380.2.1 No alias alpha-class expansin 0.06 Archaeplastida
Zm00001e000429_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e004714_P001 No alias alpha-class expansin 0.08 Archaeplastida
Zm00001e004719_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e004720_P001 No alias alpha-class expansin 0.07 Archaeplastida
Zm00001e004721_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e011741_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e014231_P001 No alias Expansin-A13 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e014247_P001 No alias Expansin-A23 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e017221_P001 No alias alpha-class expansin 0.05 Archaeplastida
Zm00001e017334_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e029218_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036693_P001 No alias alpha-class expansin 0.04 Archaeplastida
Zm00001e038997_P001 No alias alpha-class expansin 0.07 Archaeplastida
AMTR_s00010p00264980 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 LandPlants
AMTR_s00012p00230920 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 LandPlants
AMTR_s00072p00134750 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 LandPlants
AMTR_s00077p00063420 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 LandPlants
AT1G12560 ATEXP7, EXPA7,... expansin A7 0.05 LandPlants
AT1G20190 ATEXPA11, ATHEXP... expansin 11 0.04 LandPlants
AT1G26770 ATEXPA10,... expansin A10 0.01 LandPlants
AT1G62980 EXPA18, EXP18,... expansin A18 0.05 LandPlants
AT1G69530 ATEXPA1, EXP1,... expansin A1 0.01 LandPlants
AT2G37640 ATEXPA3, EXP3,... Barwin-like endoglucanases superfamily protein 0.05 LandPlants
AT2G40610 EXPA8, ATHEXP... expansin A8 0.05 LandPlants
AT3G15370 ATHEXP ALPHA... expansin 12 0.02 LandPlants
AT3G29030 EXP5, ATHEXP... expansin A5 0.05 LandPlants
AT4G01630 ATHEXP ALPHA... expansin A17 0.04 LandPlants
GSVIVT01011437001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 LandPlants
GSVIVT01024572001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 LandPlants
GSVIVT01024946001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 LandPlants
GSVIVT01025509001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 LandPlants
GSVIVT01028215001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 LandPlants
GSVIVT01028474001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 LandPlants
GSVIVT01029411001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 LandPlants
GSVIVT01032681001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 LandPlants
Gb_01504 No alias alpha-class expansin 0.02 LandPlants
Gb_04404 No alias alpha-class expansin 0.02 LandPlants
Gb_06139 No alias alpha-class expansin 0.02 LandPlants
Gb_07423 No alias alpha-class expansin 0.01 LandPlants
Gb_07424 No alias alpha-class expansin 0.02 LandPlants
Gb_09118 No alias alpha-class expansin 0.02 LandPlants
LOC_Os01g14660.1 No alias alpha-class expansin 0.04 LandPlants
LOC_Os03g06020.1 No alias alpha-class expansin 0.04 LandPlants
LOC_Os03g06050.1 No alias alpha-class expansin 0.06 LandPlants
LOC_Os03g21820.1 No alias alpha-class expansin 0.05 LandPlants
LOC_Os03g31480.1 No alias alpha-class expansin 0.06 LandPlants
LOC_Os04g15840.1 No alias alpha-class expansin 0.04 LandPlants
LOC_Os05g19600.1 No alias alpha-class expansin 0.04 LandPlants
LOC_Os05g39990.1 No alias alpha-class expansin 0.03 LandPlants
LOC_Os10g30330.1 No alias alpha-class expansin 0.04 LandPlants
LOC_Os10g30340.1 No alias alpha-class expansin 0.05 LandPlants
LOC_Os10g39110.1 No alias alpha-class expansin 0.05 LandPlants
MA_10020g0010 No alias alpha-class expansin 0.03 LandPlants
MA_100868g0010 No alias alpha-class expansin 0.05 LandPlants
MA_104065g0020 No alias alpha-class expansin 0.02 LandPlants
MA_10425823g0010 No alias alpha-class expansin 0.02 LandPlants
MA_14588g0010 No alias alpha-class expansin 0.03 LandPlants
MA_18265g0010 No alias alpha-class expansin 0.03 LandPlants
MA_200461g0010 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.01 LandPlants
MA_274624g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_30127g0010 No alias alpha-class expansin 0.04 LandPlants
MA_36587g0010 No alias alpha-class expansin 0.04 LandPlants
MA_37884g0010 No alias alpha-class expansin 0.03 LandPlants
MA_474624g0010 No alias alpha-class expansin 0.03 LandPlants
MA_4979g0010 No alias alpha-class expansin 0.03 LandPlants
MA_61945g0010 No alias alpha-class expansin 0.01 LandPlants
MA_86877g0010 No alias alpha-class expansin 0.02 LandPlants
MA_8784268g0010 No alias no hits & (original description: none) 0.07 LandPlants
Mp1g24230.1 No alias alpha-class expansin 0.02 LandPlants
Mp1g26350.1 No alias alpha-class expansin 0.02 LandPlants
Mp4g06560.1 No alias alpha-class expansin 0.02 LandPlants
Mp5g20420.1 No alias alpha-class expansin 0.02 LandPlants
Mp8g18860.1 No alias alpha-class expansin 0.02 LandPlants
Pp3c13_20360V3.1 No alias expansin A9 0.03 LandPlants
Pp3c24_15400V3.1 No alias expansin A15 0.03 LandPlants
Smo143857 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.01 LandPlants
Smo174522 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 LandPlants
Smo179212 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 LandPlants
Smo231226 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.01 LandPlants
Smo409954 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 LandPlants
Smo78615 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 LandPlants
Solyc04g081870.4.1 No alias alpha-class expansin 0.05 LandPlants
Solyc05g052250.3.1 No alias alpha-class expansin 0.06 LandPlants
Solyc06g051800.3.1 No alias alpha-class expansin 0.02 LandPlants
Solyc08g007780.3.1 No alias Putative expansin-A30 OS=Oryza sativa subsp. japonica... 0.05 LandPlants
Solyc08g080060.4.1 No alias alpha-class expansin 0.05 LandPlants
Solyc09g010860.4.1 No alias alpha-class expansin 0.03 LandPlants
Solyc12g089380.2.1 No alias alpha-class expansin 0.05 LandPlants
Zm00001e000429_P001 No alias alpha-class expansin 0.03 LandPlants
Zm00001e004714_P001 No alias alpha-class expansin 0.06 LandPlants
Zm00001e017221_P001 No alias alpha-class expansin 0.02 LandPlants
Zm00001e017334_P001 No alias alpha-class expansin 0.03 LandPlants
Zm00001e019433_P001 No alias alpha-class expansin 0.01 LandPlants
Zm00001e038997_P001 No alias alpha-class expansin 0.06 LandPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 65 158
IPR007117 Expansin_CBD 169 249
No external refs found!