Solyc03g033500.4.1 (ATCSP3, CSP3, Solyc03g033500)


Aliases : ATCSP3, CSP3, Solyc03g033500

Description : RNA chaperone (CSP). mRNA chaperone (CSD)


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g033500.4.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G17870 ATCSP3, CSP3 cold shock domain protein 3 0.14 OrthoFinder output from all 47 species
AT4G38680 ATCSP2, GRP2, CSDP2, CSP2 glycine rich protein 2 0.04 OrthoFinder output from all 47 species
Adi_g007943 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Als_g03295 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0267.g061051 ATCSP3, CSP3 cold-responsive mRNA chaperone *(CSD) & original... 0.05 OrthoFinder output from all 47 species
Cba_g69745 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Pp3c5_7920V3.1 GRP2B, ATGRP2B,... cold shock domain protein 1 0.04 OrthoFinder output from all 47 species
Sam_g19168 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 9 72
IPR001878 Znf_CCHC 94 108
IPR001878 Znf_CCHC 150 166
IPR001878 Znf_CCHC 199 215
IPR001878 Znf_CCHC 121 136
No external refs found!