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LOC_Os03g25960.1


Description : RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana (sp|q9zuu4|cp29b_arath : 240.0)


Gene families : OG_01_0000043 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000043_tree ,
OG_02_0000810 (LandPlants) Phylogenetic Tree(s): OG_02_0000810_tree ,
OG_03_0004328 (SeedPlants) Phylogenetic Tree(s): OG_03_0004328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g25960.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271280 evm_27.TU.AmTr_v1... 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.02 Archaeplastida
AMTR_s00008p00202090 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00044p00073410 evm_27.TU.AmTr_v1... Organelle RRM domain-containing protein 6, chloroplastic... 0.02 Archaeplastida
AMTR_s00061p00032260 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00061p00142700 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00148p00072380 evm_27.TU.AmTr_v1... 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.02 Archaeplastida
AMTR_s00166p00060690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT1G73530 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.09 Archaeplastida
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.12 Archaeplastida
AT2G37510 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
AT3G23830 GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 0.03 Archaeplastida
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.17 Archaeplastida
AT3G53460 CP29 chloroplast RNA-binding protein 29 0.03 Archaeplastida
AT4G13850 GRP2, ATGRP2, GR-RBP2 glycine-rich RNA-binding protein 2 0.03 Archaeplastida
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.2 Archaeplastida
Cpa|evm.model.tig00000944.16 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre01.g032300 No alias No description available 0.02 Archaeplastida
Cre09.g392350 No alias Glycine-rich RNA-binding protein 2, mitochondrial... 0.01 Archaeplastida
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.07 Archaeplastida
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.13 Archaeplastida
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.08 Archaeplastida
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.12 Archaeplastida
Gb_09687 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.08 Archaeplastida
Gb_29798 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.09 Archaeplastida
Gb_37522 No alias Organelle RRM domain-containing protein 1, chloroplastic... 0.07 Archaeplastida
Gb_39591 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.07 Archaeplastida
MA_1460g0010 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.02 Archaeplastida
MA_185349g0010 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.12 Archaeplastida
MA_367032g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_474396g0010 No alias RNA editing factor (CP31) 0.05 Archaeplastida
MA_7844926g0010 No alias Organelle RRM domain-containing protein 1, chloroplastic... 0.04 Archaeplastida
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.27 Archaeplastida
Mp3g24820.1 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.02 Archaeplastida
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 Archaeplastida
Pp3c12_9890V3.1 No alias chloroplast RNA-binding protein 29 0.05 Archaeplastida
Pp3c1_6280V3.1 No alias glycine-rich RNA-binding protein 3 0.02 Archaeplastida
Pp3c8_16740V3.1 No alias chloroplast RNA-binding protein 29 0.07 Archaeplastida
Solyc01g006940.4.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.12 Archaeplastida
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.18 Archaeplastida
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.06 Archaeplastida
Solyc09g011210.4.1 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.04 Archaeplastida
Solyc10g086150.2.1 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.19 Archaeplastida
Zm00001e001824_P002 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.08 Archaeplastida
Zm00001e003947_P001 No alias RNA editing factor (CP31) 0.16 Archaeplastida
Zm00001e010844_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
Zm00001e022086_P002 No alias RNA editing factor (CP31) 0.28 Archaeplastida
Zm00001e032835_P001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.25 Archaeplastida
Zm00001e033465_P001 No alias RNA editing factor (CP31) 0.22 Archaeplastida
AMTR_s00002p00271280 evm_27.TU.AmTr_v1... 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.02 LandPlants
AMTR_s00061p00142700 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 LandPlants
AMTR_s00148p00072380 evm_27.TU.AmTr_v1... 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.02 LandPlants
AMTR_s00166p00060690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 LandPlants
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.12 LandPlants
AT3G53460 CP29 chloroplast RNA-binding protein 29 0.02 LandPlants
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.2 LandPlants
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.07 LandPlants
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.11 LandPlants
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.08 LandPlants
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.12 LandPlants
Gb_29798 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.09 LandPlants
MA_185349g0010 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.03 LandPlants
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.11 LandPlants
MA_474396g0010 No alias RNA editing factor (CP31) 0.05 LandPlants
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.26 LandPlants
Mp3g24820.1 No alias RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.02 LandPlants
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 LandPlants
Pp3c12_9890V3.1 No alias chloroplast RNA-binding protein 29 0.05 LandPlants
Solyc03g111840.3.1 No alias RNA editing factor (CP31) 0.17 LandPlants
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.05 LandPlants
Solyc10g086150.2.1 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.18 LandPlants
Zm00001e001824_P002 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.07 LandPlants
Zm00001e003947_P001 No alias RNA editing factor (CP31) 0.16 LandPlants
Zm00001e022086_P002 No alias RNA editing factor (CP31) 0.27 LandPlants
Zm00001e033465_P001 No alias RNA editing factor (CP31) 0.22 LandPlants
AMTR_s00148p00072380 evm_27.TU.AmTr_v1... 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.02 SeedPlants
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.12 SeedPlants
AT3G53460 CP29 chloroplast RNA-binding protein 29 0.02 SeedPlants
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.11 SeedPlants
Gb_29798 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.07 SeedPlants
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.11 SeedPlants
Solyc09g007850.3.1 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.05 SeedPlants
Solyc10g086150.2.1 No alias 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.18 SeedPlants
Zm00001e001824_P002 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.07 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 88 158
IPR000504 RRM_dom 182 252
No external refs found!