Solyc03g031720.3.1 (ATRBP45C, Solyc03g031720)

Aliases : ATRBP45C, Solyc03g031720

Description : mRNA-binding regulatory factor (RBP45/47)

Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g031720.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00247520	evm_27.TU.AmTr_v1...	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AMTR_s00062p00161920	ATRBP45A,...	Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00157p00079360	ATRBP47C',...	Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT3G19130	ATRBP47B, RBP47B	RNA-binding protein 47B	0.05	OrthoFinder output from all 47 species
Adi_g108132	RBP45B, ATRBP45B	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g113480	ATRBP47B, RBP47B	regulatory factor *(RBP45/47) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Als_g26974	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Aop_g60257	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Cba_g05169	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.05	OrthoFinder output from all 47 species
Ceric.06G020000.1	Ceric.06G020000	regulatory factor *(RBP45/47) of mRNA stress granule...	0.04	OrthoFinder output from all 47 species
GSVIVT01037635001	ATRBP45C	Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_06023	No alias	mRNA-binding regulatory factor (RBP45/47)	0.03	OrthoFinder output from all 47 species
LOC_Os02g35950.1	ATRBP47C',...	mRNA-binding regulatory factor (RBP45/47)	0.04	OrthoFinder output from all 47 species
LOC_Os03g07800.1	LOC_Os03g07800	mRNA-binding regulatory factor (RBP45/47)	0.02	OrthoFinder output from all 47 species
LOC_Os04g37690.1	ATRBP47C',...	mRNA-binding regulatory factor (RBP45/47)	0.03	OrthoFinder output from all 47 species
LOC_Os07g33330.1	ATRBP45A,...	mRNA-binding regulatory factor (RBP45/47)	0.03	OrthoFinder output from all 47 species
Lfl_g33868	ATRBP45C	regulatory factor *(RBP45/47) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
MA_10430323g0010	No alias	mRNA-binding regulatory factor (RBP45/47)	0.03	OrthoFinder output from all 47 species
MA_10433182g0010	ATRBP45C	Polyadenylate-binding protein RBP47C OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_10433660g0010	No alias	mRNA-binding regulatory factor (RBP45/47)	0.06	OrthoFinder output from all 47 species
MA_29443g0010	ATRBP45C	mRNA-binding regulatory factor (RBP45/47)	0.02	OrthoFinder output from all 47 species
Mp8g07840.1	No alias	mRNA-binding regulatory factor (RBP45/47)	0.03	OrthoFinder output from all 47 species
Ore_g09196	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Ore_g34352	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Pir_g17296	ATRBP47B, RBP47B	regulatory factor *(RBP45/47) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Pir_g18156	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008579	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Sam_g18732	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Sam_g39348	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Smo80061	ATRBP47C', RBP47C'	Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia	0.05	OrthoFinder output from all 47 species
Spa_g51224	ATRBP47B, RBP47B	regulatory factor *(RBP45/47) of mRNA stress granule...	0.03	OrthoFinder output from all 47 species
Tin_g04618	No alias	regulatory factor *(RBP45/47) of mRNA stress granule...	0.02	OrthoFinder output from all 47 species
Zm00001e000547_P001	Zm00001e000547	mRNA-binding regulatory factor (RBP45/47)	0.03	OrthoFinder output from all 47 species
Zm00001e022780_P001	ATRBP47C',...	mRNA-binding regulatory factor (RBP45/47)	0.09	OrthoFinder output from all 47 species
Zm00001e040981_P001	ATRBP47C',...	mRNA-binding regulatory factor (RBP45/47)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	273	337
IPR000504	RRM_dom	167	236
IPR000504	RRM_dom	74	141

External Links

No external refs found!

Solyc03g031720.3.1 (ATRBP45C, Solyc03g031720)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation