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  5. Solyc03g026190.3.1

Solyc03g026190.3.1 (SLK2, Solyc03g026190)


Aliases : SLK2, Solyc03g026190

Description : Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana (sp|q94bp0|slk2_arath : 422.0)


Gene families : OG0000747 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g026190.3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G43850 SEU SEUSS transcriptional co-regulator 0.1 OrthoFinder output from all 47 species
AT4G25515 SLK3 SEUSS-like 3 0.04 OrthoFinder output from all 47 species
Adi_g016540 SEU adapter component *(SEU/SLK) of transcriptional... 0.06 OrthoFinder output from all 47 species
Adi_g042651 SEU adapter component *(SEU/SLK) of transcriptional... 0.02 OrthoFinder output from all 47 species
Adi_g086246 SEU adapter component *(SEU/SLK) of transcriptional... 0.03 OrthoFinder output from all 47 species
Adi_g117115 SEU adapter component *(SEU/SLK) of transcriptional... 0.04 OrthoFinder output from all 47 species
Als_g11136 SEU adapter component *(SEU/SLK) of transcriptional... 0.02 OrthoFinder output from all 47 species
Aop_g21250 SEU adapter component *(SEU/SLK) of transcriptional... 0.02 OrthoFinder output from all 47 species
Aspi01Gene69099.t1 SEU, Aspi01Gene69099 adapter component *(SEU/SLK) of transcriptional... 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026282 SEU adapter component *(SEU/SLK) of transcriptional... 0.03 OrthoFinder output from all 47 species
Ceric.01G063700.1 SEU, Ceric.01G063700 adapter component *(SEU/SLK) of transcriptional... 0.07 OrthoFinder output from all 47 species
Ceric.03G041400.1 SEU, Ceric.03G041400 adapter component *(SEU/SLK) of transcriptional... 0.07 OrthoFinder output from all 47 species
Dac_g22707 SEU adapter component *(SEU/SLK) of transcriptional... 0.05 OrthoFinder output from all 47 species
Ehy_g23719 SEU adapter component *(SEU/SLK) of transcriptional... 0.05 OrthoFinder output from all 47 species
Ehy_g29191 SEU adapter component *(SEU/SLK) of transcriptional... 0.04 OrthoFinder output from all 47 species
GSVIVT01010616001 SLK2 Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
Gb_04218 SEU Transcriptional corepressor SEUSS OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Gb_04695 SLK2 Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_27183 SEU Transcriptional corepressor SEUSS OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os11g10060.1 SEU, LOC_Os11g10060 Transcriptional corepressor SEUSS OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
LOC_Os11g10070.1 SEU, LOC_Os11g10070 Transcriptional corepressor SEUSS OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Len_g41806 SEU adapter component *(SEU/SLK) of transcriptional... 0.04 OrthoFinder output from all 47 species
Lfl_g05019 SEU adapter component *(SEU/SLK) of transcriptional... 0.06 OrthoFinder output from all 47 species
MA_12796g0010 SEU Transcriptional corepressor SEUSS OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_13825g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_208023g0010 SLK2 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_28020g0010 SLK2 Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_33392g0010 SLK2 Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Nbi_g03852 SEU adapter component *(SEU/SLK) of transcriptional... 0.03 OrthoFinder output from all 47 species
Ore_g15709 SEU adapter component *(SEU/SLK) of transcriptional... 0.02 OrthoFinder output from all 47 species
Ore_g42762 SEU adapter component *(SEU/SLK) of transcriptional... 0.02 OrthoFinder output from all 47 species
Pir_g13626 SEU adapter component *(SEU/SLK) of transcriptional... 0.04 OrthoFinder output from all 47 species
Pp3c25_7960V3.1 SEU, Pp3c25_7960 SEUSS transcriptional co-regulator 0.03 OrthoFinder output from all 47 species
Ppi_g04706 SEU adapter component *(SEU/SLK) of transcriptional... 0.04 OrthoFinder output from all 47 species
Tin_g20497 SEU adapter component *(SEU/SLK) of transcriptional... 0.07 OrthoFinder output from all 47 species
Zm00001e011073_P001 SEU, Zm00001e011073 Transcriptional corepressor SEUSS OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e029868_P001 SLK2, Zm00001e029868 Probable transcriptional regulator SLK2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e039584_P001 SEU, Zm00001e039584 Transcriptional corepressor SEUSS OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043167 ion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR029005 LIM-bd/SEUSS 300 553
No external refs found!