Solyc03g025970.3.1 (MBD13, Solyc03g025970)

Aliases : MBD13, Solyc03g025970

Description : no hits & (original description: none)

Gene families : OG0000559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000559_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g025970.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00261370	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
Adi_g008918	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g018652	MBD05, MBD5, ATMBD5	methylation reader *(MBD5-6) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g081598	No alias	methylation reader *(MBD5-6) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g110319	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene15846.t1	Aspi01Gene15846	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0028.g024028	ATMBD6, MBD6	methylation reader *(MBD5-6) & original description: CDS=264-1880	0.03	OrthoFinder output from all 47 species
Cba_g37743	ATMBD6, MBD6	methylation reader *(MBD5-6) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.26G030700.1	ATMBD6, MBD6,...	not classified & original description: pacid=50599956...	0.03	OrthoFinder output from all 47 species
Dac_g09137	MBD05, MBD5, ATMBD5	methylation reader *(MBD5-6) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g16213	MBD05, MBD5, ATMBD5	methylation reader *(MBD5-6) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g20923	MBD05, MBD5, ATMBD5	methylation reader *(MBD5-6) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06705	MBD05, MBD5, ATMBD5	methylation reader *(MBD5-6) & original description: none	0.02	OrthoFinder output from all 47 species
Gb_03340	MBD05, MBD5, ATMBD5	methylation reader (MBD5-6)	0.05	OrthoFinder output from all 47 species
Len_g08112	No alias	methylation reader *(MBD5-6) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g38746	MBD05, MBD5, ATMBD5	methylation reader *(MBD5-6) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g14173	ATMBD6, MBD6	methylation reader *(MBD5-6) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29243	MBD05, MBD5, ATMBD5	methylation reader *(MBD5-6) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g14486	ATMBD6, MBD6	methylation reader *(MBD5-6) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g26548	No alias	methylation reader *(MBD5-6) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g08719	MBD05, MBD5, ATMBD5	methylation reader *(MBD5-6) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0018995	host cellular component	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	HCCA
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0005534	galactose binding	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0048029	monosaccharide binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001739	Methyl_CpG_DNA-bd	4	51
IPR001739	Methyl_CpG_DNA-bd	83	130

External Links

No external refs found!

Solyc03g025970.3.1 (MBD13, Solyc03g025970)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation