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  5. Solyc03g006260.4.1

Solyc03g006260.4.1 (Solyc03g006260)


Aliases : Solyc03g006260

Description : cation exchanger (NCL/EF-CAX)


Gene families : OG0000757 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000757_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g006260.4.1

Target Alias Description ECC score Gene Family Method Actions
AT1G29020 No alias Calcium-binding EF-hand family protein 0.03 OrthoFinder output from all 47 species
AT2G34020 No alias Calcium-binding EF-hand family protein 0.04 OrthoFinder output from all 47 species
Aop_g59636 No alias cation exchanger *(NCL/EF-CAX) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25726 No alias cation exchanger *(NCL/EF-CAX) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_22443 No alias Sodium/calcium exchanger NCL2 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Gb_22444 No alias cation exchanger (NCL/EF-CAX) 0.04 OrthoFinder output from all 47 species
Gb_27008 No alias cation exchanger (NCL/EF-CAX) 0.04 OrthoFinder output from all 47 species
LOC_Os01g11414.1 LOC_Os01g11414 cation exchanger (NCL/EF-CAX) 0.02 OrthoFinder output from all 47 species
Lfl_g16288 No alias cation exchanger *(NCL/EF-CAX) & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g15310.1 No alias cation exchanger (NCL/EF-CAX) 0.02 OrthoFinder output from all 47 species
Ore_g32866 No alias cation exchanger *(NCL/EF-CAX) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g12151 No alias cation exchanger *(NCL/EF-CAX) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59906 No alias cation exchanger *(NCL/EF-CAX) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026032_P005 Zm00001e026032 cation exchanger (NCL/EF-CAX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 425 491
IPR002048 EF_hand_dom 288 354
IPR004837 NaCa_Exmemb 547 691
IPR004837 NaCa_Exmemb 67 243
No external refs found!