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  5. Solyc03g005610.4.1

Solyc03g005610.4.1 (Solyc03g005610)


Aliases : Solyc03g005610

Description : Polyubiquitin (Fragment) OS=Acetabularia peniculus (sp|p42739|ubiqp_acepe : 157.0)


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g005610.4.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00161810 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
Ala_g12291 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g46335 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene08346.t1 UBQ11, Aspi01Gene08346 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19721 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G071400.1 UBQ14, Ceric.12G071400 UBQ ubiquitin-fold protein & original description:... 0.03 OrthoFinder output from all 47 species
Cre07.g317050 No alias Polyubiquitin (Fragment) OS=Acetabularia peniculus 0.02 OrthoFinder output from all 47 species
LOC_Os07g30640.1 LOC_Os07g30640 component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp4g02740.1 UBQ10 ubiquitin-fold protein (UBQ) 0.02 OrthoFinder output from all 47 species
Msp_g17628 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34148 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41064 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 112 163
IPR000626 Ubiquitin-like_dom 243 310
IPR000626 Ubiquitin-like_dom 24 85
IPR000626 Ubiquitin-like_dom 178 236
No external refs found!