Solyc02g093460.4.1 (Solyc02g093460)

Aliases : Solyc02g093460

Description : tRNA pseudouridine synthase (TruB)

Gene families : OG0003765 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003765_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g093460.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00225390	evm_27.TU.AmTr_v1...	RNA processing.RNA...	0.03	OrthoFinder output from all 47 species
AT5G14460	No alias	Pseudouridine synthase family protein	0.13	OrthoFinder output from all 47 species
Aop_g12048	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0051.g031272	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Ceric.07G028400.1	Ceric.07G028400	TruB-type tRNA pseudouridine synthase & original...	0.06	OrthoFinder output from all 47 species
Dcu_g21012	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01032383001	No alias	RNA processing.RNA...	0.06	OrthoFinder output from all 47 species
LOC_Os05g01750.1	LOC_Os05g01750	tRNA pseudouridine synthase (TruB)	0.08	OrthoFinder output from all 47 species
Len_g31733	No alias	TruB-type tRNA pseudouridine synthase & original...	0.02	OrthoFinder output from all 47 species
Nbi_g34525	No alias	TruB-type tRNA pseudouridine synthase & original...	0.04	OrthoFinder output from all 47 species
Ore_g25312	No alias	TruB-type tRNA pseudouridine synthase & original...	0.03	OrthoFinder output from all 47 species
Ppi_g02642	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g26745	No alias	TruB-type tRNA pseudouridine synthase & original...	0.04	OrthoFinder output from all 47 species
Smo75554	No alias	RNA processing.RNA...	0.06	OrthoFinder output from all 47 species
Tin_g23508	No alias	TruB-type tRNA pseudouridine synthase & original...	0.02	OrthoFinder output from all 47 species
Zm00001e029672_P001	Zm00001e029672	tRNA pseudouridine synthase (TruB)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002501	PsdUridine_synth_N	341	491
IPR032819	TruB_C	492	535

External Links

No external refs found!

Solyc02g093460.4.1 (Solyc02g093460)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation