Solyc02g093300.3.1 (ICU2, Solyc02g093300)

Aliases : ICU2, Solyc02g093300

Description : catalytic component POLA1 of DNA polymerase alpha complex

Gene families : OG0005633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005633_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g093300.3.1
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00221560	ICU2,...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.17	OrthoFinder output from all 47 species
AT5G67100	ICU2	DNA-directed DNA polymerases	0.14	OrthoFinder output from all 47 species
Als_g33916	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.08	OrthoFinder output from all 47 species
Aspi01Gene70874.t1	ICU2, Aspi01Gene70874	catalytic component *(POLA1) of DNA polymerase alpha...	0.05	OrthoFinder output from all 47 species
Azfi_s0226.g059002	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.11	OrthoFinder output from all 47 species
Ceric.09G047200.1	ICU2, Ceric.09G047200	catalytic component *(POLA1) of DNA polymerase alpha...	0.15	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000237.42	ICU2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.05	OrthoFinder output from all 47 species
Cre04.g214350	ICU2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.11	OrthoFinder output from all 47 species
Dac_g30890	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.03	OrthoFinder output from all 47 species
Dcu_g12848	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.08	OrthoFinder output from all 47 species
GSVIVT01022113001	ICU2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.19	OrthoFinder output from all 47 species
Gb_26053	ICU2	catalytic component POLA1 of DNA polymerase alpha complex	0.15	OrthoFinder output from all 47 species
Gb_26055	ICU2	DNA polymerase alpha catalytic subunit OS=Oryza sativa...	0.15	OrthoFinder output from all 47 species
LOC_Os01g64820.1	ICU2, LOC_Os01g64820	catalytic component POLA1 of DNA polymerase alpha complex	0.16	OrthoFinder output from all 47 species
Len_g55945	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.1	OrthoFinder output from all 47 species
MA_10427959g0010	ICU2	DNA polymerase alpha catalytic subunit OS=Arabidopsis...	0.16	OrthoFinder output from all 47 species
MA_242082g0010	ICU2	catalytic component POLA1 of DNA polymerase alpha complex	0.16	OrthoFinder output from all 47 species
MA_3471g0020	ICU2	DNA polymerase alpha catalytic subunit OS=Oryza sativa...	0.17	OrthoFinder output from all 47 species
Mp7g03960.1	ICU2	catalytic component POLA1 of DNA polymerase alpha complex	0.15	OrthoFinder output from all 47 species
Msp_g14735	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.07	OrthoFinder output from all 47 species
Nbi_g01498	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.05	OrthoFinder output from all 47 species
Ppi_g18918	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.02	OrthoFinder output from all 47 species
Sam_g08423	No alias	catalytic component *(POLA1) of DNA polymerase alpha...	0.07	OrthoFinder output from all 47 species
Smo232193	ICU2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.05	OrthoFinder output from all 47 species
Smo422725	ICU2	Cell cycle.interphase.DNA replication.elongation.DNA...	0.04	OrthoFinder output from all 47 species
Spa_g09409	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.09	OrthoFinder output from all 47 species
Tin_g01298	ICU2	catalytic component *(POLA1) of DNA polymerase alpha...	0.08	OrthoFinder output from all 47 species
Zm00001e019156_P001	ICU2, Zm00001e019156	catalytic component POLA1 of DNA polymerase alpha complex	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003896	DNA primase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
CC	GO:0042575	DNA polymerase complex	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043625	delta DNA polymerase complex	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006133	DNA-dir_DNA_pol_B_exonuc	408	784
IPR015088	Znf_DNA-dir_DNA_pol_B_alpha	1354	1557
IPR006134	DNA-dir_DNA_pol_B_multi_dom	850	1313
IPR024647	DNA_pol_a_cat_su_N	27	95

External Links

No external refs found!

Solyc02g093300.3.1 (ICU2, Solyc02g093300)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation