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  5. Solyc02g090910.3.1

Solyc02g090910.3.1 (Solyc02g090910)


Aliases : Solyc02g090910

Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 118.0)


Gene families : OG0001265 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001265_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g090910.3.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g02287 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27656 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010769 No alias not classified & original description: CDS=270-1544 0.02 OrthoFinder output from all 47 species
Azfi_s0214.g058333 No alias not classified & original description: CDS=705-1877 0.03 OrthoFinder output from all 47 species
Azfi_s1420.g102857 No alias not classified & original description: CDS=709-1824 0.04 OrthoFinder output from all 47 species
Dac_g12970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14763 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10033 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03584 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022126001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_27963 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g09675 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g11399 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05577 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g12133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04284 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16481 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18496 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22004 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018673_P002 Zm00001e018673 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Zm00001e028338_P001 Zm00001e028338 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 94 161
IPR000504 RRM_dom 6 64
IPR000504 RRM_dom 239 293
No external refs found!