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  5. Solyc02g088110.4.1

Solyc02g088110.4.1 (PTB1, PTB, ATPTB1,...)


Aliases : PTB1, PTB, ATPTB1, Solyc02g088110

Description : PTB-type RNA splicing factor


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g088110.4.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g056332 PTB1, PTB, ATPTB1 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10256 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0075.g037678 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: CDS=297-2102 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.21 No alias Polypyrimidine tract-binding protein homolog 3... 0.02 OrthoFinder output from all 47 species
Dcu_g11646 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_09196 PTB2, ATPTB2 PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
LOC_Os03g25980.2 PTB1, PTB,... PTB-type RNA splicing factor 0.04 OrthoFinder output from all 47 species
MA_10431256g0010 PTB1, PTB, ATPTB1 PTB-type RNA splicing factor 0.03 OrthoFinder output from all 47 species
Ore_g08278 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07274 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50887 No alias RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g42034 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 21 71
IPR021790 PTBP1-like_RRM2 242 320
No external refs found!