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  5. Solyc02g087660.4.1

Solyc02g087660.4.1 (PIN8, ATPIN8, Solyc02g087660)


Aliases : PIN8, ATPIN8, Solyc02g087660

Description : auxin transporter (PIN). auxin efflux transporter (PIN)


Gene families : OG0000569 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000569_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g087660.4.1
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Aev_g17447 ATPIN4, PIN4 auxin efflux transporter *(PIN) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26007 EIR1, WAV6,... auxin efflux transporter *(PIN) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12472 PIN3, ATPIN3 auxin efflux transporter *(PIN) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g38942 PIN3, ATPIN3 auxin efflux transporter *(PIN) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19454 EIR1, WAV6,... auxin efflux transporter *(PIN) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025748001 ATPIN1, PIN1 Solute transport.carrier-mediated transport.BART... 0.05 OrthoFinder output from all 47 species
GSVIVT01029266001 EIR1, WAV6,... Solute transport.carrier-mediated transport.BART... 0.04 OrthoFinder output from all 47 species
LOC_Os12g04000.1 ATPIN1, PIN1,... auxin transporter (PIN). auxin efflux transporter (PIN) 0.02 OrthoFinder output from all 47 species
Msp_g13884 PIN3, ATPIN3 auxin efflux transporter *(PIN) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28472 No alias auxin efflux transporter *(PIN) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g006900.2.1 EIR1, WAV6,... auxin transporter (PIN). auxin efflux transporter (PIN) 0.03 OrthoFinder output from all 47 species
Zm00001e036089_P001 ATPIN1, PIN1,... auxin transporter (PIN). auxin efflux transporter (PIN) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
InterPro domains Description Start Stop
IPR004776 Mem_trans 9 352
No external refs found!