Solyc02g086470.3.1 (Solyc02g086470)

Aliases : Solyc02g086470

Description : no hits & (original description: none)

Gene families : OG0008306 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008306_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g086470.3.1
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00014p00252440	evm_27.TU.AmTr_v1...	COMPASS-like H3K4 histone methylase component WDR5A...	0.17	OrthoFinder output from all 47 species
AT3G27640	No alias	Transducin/WD40 repeat-like superfamily protein	0.11	OrthoFinder output from all 47 species
Als_g15287	No alias	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.1	OrthoFinder output from all 47 species
Aop_g06119	No alias	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Aspi01Gene04216.t1	Aspi01Gene04216	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.08	OrthoFinder output from all 47 species
Azfi_s0076.g037840	No alias	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.08	OrthoFinder output from all 47 species
Ceric.16G026900.1	Ceric.16G026900	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.1	OrthoFinder output from all 47 species
Cre01.g036100	No alias	No description available	0.07	OrthoFinder output from all 47 species
Dcu_g01530	No alias	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.12	OrthoFinder output from all 47 species
GSVIVT01032413001	No alias	COMPASS-like H3K4 histone methylase component WDR5A...	0.22	OrthoFinder output from all 47 species
Gb_09523	No alias	no hits & (original description: none)	0.19	OrthoFinder output from all 47 species
LOC_Os03g49200.1	LOC_Os03g49200	no hits & (original description: none)	0.11	OrthoFinder output from all 47 species
Len_g14540	No alias	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.05	OrthoFinder output from all 47 species
MA_10429760g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_10429760g0020	No alias	no hits & (original description: none)	0.18	OrthoFinder output from all 47 species
Mp8g16590.1	No alias	COMPASS-like H3K4 histone methylase component WDR5A...	0.13	OrthoFinder output from all 47 species
Zm00001e012236_P003	Zm00001e012236	no hits & (original description: none)	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
CC	GO:0000808	origin recognition complex	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003896	DNA primase activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005664	nuclear origin of replication recognition complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	356	389
IPR001680	WD40_repeat	102	136
IPR001680	WD40_repeat	141	179

External Links

No external refs found!

Solyc02g086470.3.1 (Solyc02g086470)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation