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  5. Solyc02g084920.3.1

Solyc02g084920.3.1 (PBF1, Solyc02g084920)


Aliases : PBF1, Solyc02g084920

Description : component beta type-6 of 26S proteasome


Gene families : OG0004409 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004409_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g084920.3.1

Target Alias Description ECC score Gene Family Method Actions
AT3G60820 PBF1 N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.1 OrthoFinder output from all 47 species
Adi_g015227 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Aev_g01998 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Als_g08527 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Als_g37944 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aop_g00288 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Azfi_s0392.g067771 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Cba_g31823 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ceric.24G072400.1 PBF1, Ceric.24G072400 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.5 PBF1 Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
Cre26.g756797 PBF1 Protein degradation.26S proteasome.20S core... 0.09 OrthoFinder output from all 47 species
Dac_g02574 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Dcu_g00884 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Ehy_g28912 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
GSVIVT01000943001 PBF1 Protein degradation.26S proteasome.20S core... 0.1 OrthoFinder output from all 47 species
GSVIVT01027613001 PBF1 Protein degradation.26S proteasome.20S core... 0.13 OrthoFinder output from all 47 species
LOC_Os09g32800.1 PBF1, LOC_Os09g32800 component beta type-6 of 26S proteasome 0.09 OrthoFinder output from all 47 species
Lfl_g00743 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Mp1g12450.1 PBF1 component beta type-6 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Msp_g43692 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Nbi_g43343 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Pp3c16_16960V3.1 PBF1, Pp3c16_16960 N-terminal nucleophile aminohydrolases (Ntn hydrolases)... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000342 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Smo94273 PBF1 Protein degradation.26S proteasome.20S core... 0.09 OrthoFinder output from all 47 species
Spa_g13091 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Spa_g16539 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Tin_g30516 PBF1 beta-type-6 component *(PBF) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Zm00001e010121_P001 PBF1, Zm00001e010121 component beta type-6 of 26S proteasome 0.07 OrthoFinder output from all 47 species
Zm00001e034624_P005 PBF1, Zm00001e034624 component beta type-6 of 26S proteasome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 13 207
No external refs found!