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  5. Solyc02g083800.4.1

Solyc02g083800.4.1 (ATCSP3, CSP3, Solyc02g083800)


Aliases : ATCSP3, CSP3, Solyc02g083800

Description : RNA chaperone (CSP). mRNA chaperone (CSD)


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g083800.4.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G17870 ATCSP3, CSP3 cold shock domain protein 3 0.09 OrthoFinder output from all 47 species
AT4G38680 ATCSP2, GRP2, CSDP2, CSP2 glycine rich protein 2 0.04 OrthoFinder output from all 47 species
Adi_g007943 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Als_g03295 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0267.g061051 ATCSP3, CSP3 cold-responsive mRNA chaperone *(CSD) & original... 0.05 OrthoFinder output from all 47 species
Pnu_g05853 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Pp3c5_7920V3.1 GRP2B, ATGRP2B,... cold shock domain protein 1 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 8 72
IPR001878 Znf_CCHC 177 192
IPR001878 Znf_CCHC 210 226
IPR001878 Znf_CCHC 119 134
IPR001878 Znf_CCHC 147 163
No external refs found!