LOC_Os03g22900.1


Description : ATPase component Ino80 of chromatin remodelling complex


Gene families : OG_01_0006593 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006593_tree ,
OG_02_0006306 (LandPlants) Phylogenetic Tree(s): OG_02_0006306_tree ,
OG_03_0008936 (SeedPlants) Phylogenetic Tree(s): OG_03_0008936_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g22900.1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00190690 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01033231001 No alias Chromatin organisation.chromatin remodeling... 0.11 Archaeplastida
Gb_04007 No alias ATPase component Ino80 of chromatin remodelling complex 0.05 Archaeplastida
MA_3312g0010 No alias ATPase component Ino80 of chromatin remodelling complex 0.07 Archaeplastida
Mp8g00130.1 No alias ATPase component Ino80 of chromatin remodelling complex 0.09 Archaeplastida
Pp3c1_3340V3.1 No alias INO80 ortholog 0.07 Archaeplastida
Pp3c2_32501V3.1 No alias INO80 ortholog 0.06 Archaeplastida
Smo444050 No alias Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
Solyc04g016370.3.1 No alias ATPase component Ino80 of chromatin remodelling complex 0.14 Archaeplastida
Zm00001e001678_P001 No alias ATPase component Ino80 of chromatin remodelling complex 0.25 Archaeplastida
Zm00001e038194_P002 No alias ATPase component Ino80 of chromatin remodelling complex 0.12 Archaeplastida
AMTR_s00053p00190690 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 LandPlants
GSVIVT01033231001 No alias Chromatin organisation.chromatin remodeling... 0.1 LandPlants
Gb_04007 No alias ATPase component Ino80 of chromatin remodelling complex 0.02 LandPlants
MA_3312g0010 No alias ATPase component Ino80 of chromatin remodelling complex 0.06 LandPlants
Mp8g00130.1 No alias ATPase component Ino80 of chromatin remodelling complex 0.07 LandPlants
Pp3c1_3340V3.1 No alias INO80 ortholog 0.07 LandPlants
Pp3c2_32501V3.1 No alias INO80 ortholog 0.05 LandPlants
Smo444050 No alias Chromatin organisation.chromatin remodeling... 0.07 LandPlants
Solyc04g016370.3.1 No alias ATPase component Ino80 of chromatin remodelling complex 0.13 LandPlants
Zm00001e001678_P001 No alias ATPase component Ino80 of chromatin remodelling complex 0.23 LandPlants
Zm00001e038194_P002 No alias ATPase component Ino80 of chromatin remodelling complex 0.12 LandPlants
AMTR_s00053p00190690 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 SeedPlants
GSVIVT01033231001 No alias Chromatin organisation.chromatin remodeling... 0.1 SeedPlants
Gb_04007 No alias ATPase component Ino80 of chromatin remodelling complex 0.02 SeedPlants
MA_3312g0010 No alias ATPase component Ino80 of chromatin remodelling complex 0.06 SeedPlants
Solyc04g016370.3.1 No alias ATPase component Ino80 of chromatin remodelling complex 0.12 SeedPlants
Zm00001e001678_P001 No alias ATPase component Ino80 of chromatin remodelling complex 0.23 SeedPlants
Zm00001e038194_P002 No alias ATPase component Ino80 of chromatin remodelling complex 0.12 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000330 SNF2_dom 582 637
IPR000330 SNF2_dom 642 823
IPR001650 Helicase_C 1143 1252
IPR020838 DBINO 343 472
No external refs found!