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  5. Solyc02g082340.3.1

Solyc02g082340.3.1 (Solyc02g082340)


Aliases : Solyc02g082340

Description : basal transcription factor (TFIa/RRN3)


Gene families : OG0004620 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004620_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g082340.3.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT2G34750 No alias RNA polymerase I specific transcription initiation... 0.04 OrthoFinder output from all 47 species
Aop_g07110 No alias basal transcription factor *(TFIa/RRN3) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene29472.t1 Aspi01Gene29472 basal transcription factor *(TFIa/RRN3) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01026448001 No alias RNA biosynthesis.RNA polymerase I-dependent... 0.04 OrthoFinder output from all 47 species
LOC_Os06g47350.2 LOC_Os06g47350 basal transcription factor (TFIa/RRN3) 0.1 OrthoFinder output from all 47 species
Mp6g17000.1 No alias basal transcription factor (TFIa/RRN3) 0.03 OrthoFinder output from all 47 species
Sam_g27581 No alias basal transcription factor *(TFIa/RRN3) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007991 RNA_pol_I_trans_ini_fac_RRN3 20 536
No external refs found!