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  5. Solyc02g081920.3.1

Solyc02g081920.3.1 (PTAC14, Solyc02g081920)


Aliases : PTAC14, Solyc02g081920

Description : PAP7/TAC14 cofactor of plastid-encoded RNA polymerase


Gene families : OG0004603 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004603_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g081920.3.1

Target Alias Description ECC score Gene Family Method Actions
AT4G20130 PTAC14 plastid transcriptionally active 14 0.22 OrthoFinder output from all 47 species
Adi_g007211 PTAC14 cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14)... 0.02 OrthoFinder output from all 47 species
Ceric.04G027900.1 PTAC14, Ceric.04G027900 cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14)... 0.05 OrthoFinder output from all 47 species
GSVIVT01012161001 PTAC14 RNA biosynthesis.organelle machineries.RNA polymerase... 0.09 OrthoFinder output from all 47 species
Gb_07348 PTAC14 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.02 OrthoFinder output from all 47 species
LOC_Os05g50980.1 PTAC14, LOC_Os05g50980 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Mp7g10810.1 PTAC14 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.16 OrthoFinder output from all 47 species
Msp_g06604 PTAC14 cofactor of plastid-encoded RNA polymerase *(PAP7/TAC14)... 0.05 OrthoFinder output from all 47 species
Zm00001e026650_P001 PTAC14, Zm00001e026650 PAP7/TAC14 cofactor of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
BP GO:0006353 DNA-templated transcription termination IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001214 SET_dom 126 349
No external refs found!