Solyc02g079020.4.1 (HSL1, VAL2, HSI2-L1,...)

Aliases : HSL1, VAL2, HSI2-L1, Solyc02g079020

Description : transcription factor (LAV-VAL)

Gene families : OG0001383 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001383_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g079020.4.1

Target	Alias	Description	ECC score	Gene Family Method	Actions
Ehy_g27144	HSL1, VAL2, HSI2-L1	LAV-VAL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g14528	HSL1, VAL2, HSI2-L1	LAV-VAL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0031011	Ino80 complex	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
CC	GO:0097346	INO80-type complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011124	Znf_CW	580	622
IPR003340	B3_DNA-bd	321	420

External Links

No external refs found!