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  5. Solyc02g078460.3.1

Solyc02g078460.3.1 (Solyc02g078460)


Aliases : Solyc02g078460

Description : RING-HC-class E3 ligase


Gene families : OG0001060 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001060_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g078460.3.1

Target Alias Description ECC score Gene Family Method Actions
AT3G47160 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G58787 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Ehy_g05418 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002021001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 OrthoFinder output from all 47 species
LOC_Os04g58320.2 LOC_Os04g58320 RING-HC-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os10g30850.1 LOC_Os10g30850 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Lfl_g02752 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05460 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
MA_20567g0010 No alias RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Nbi_g06110 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0016.g006745 No alias E3 ubiquitin ligase & original description: CDS=441-1265 0.03 OrthoFinder output from all 47 species
Sam_g18438 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004453_P001 Zm00001e004453 RING-HC-class E3 ligase 0.05 OrthoFinder output from all 47 species
Zm00001e004685_P002 Zm00001e004685 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e041948_P002 Zm00001e041948 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA

No InterPro domains available for this sequence

No external refs found!