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  5. Solyc02g078350.3.1

Solyc02g078350.3.1 (Solyc02g078350)


Aliases : Solyc02g078350

Description : Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana (sp|q84jr3|pp334_arath : 491.0)


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g078350.3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00264580 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
AMTR_s00085p00059480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.02 OrthoFinder output from all 47 species
LOC_Os07g12140.1 LOC_Os07g12140 RNA editing factor (POCO) 0.04 OrthoFinder output from all 47 species
LOC_Os07g40750.1 LOC_Os07g40750 Pentatricopeptide repeat-containing protein At4g21705,... 0.03 OrthoFinder output from all 47 species
Lfl_g39062 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Smo406783 PPR596 Pentatricopeptide repeat-containing protein At1g80270,... 0.02 OrthoFinder output from all 47 species
Solyc07g054090.3.1 Solyc07g054090 Pentatricopeptide repeat-containing protein At2g20710,... 0.04 OrthoFinder output from all 47 species
Spa_g09755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11271 No alias RNA editing factor *(POCO) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e026211_P002 Zm00001e026211 Pentatricopeptide repeat-containing protein At1g02370,... 0.03 OrthoFinder output from all 47 species
Zm00001e036620_P001 Zm00001e036620 Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090730 Las1 complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 307 334
IPR002885 Pentatricopeptide_repeat 272 292
IPR002885 Pentatricopeptide_repeat 151 210
No external refs found!