Solyc02g078260.3.1 (EMB1989, RPB2, NRPB2,...)

Aliases : EMB1989, RPB2, NRPB2, Solyc02g078260

Description : subunit 2 of Pol II RNA polymerase

Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g078260.3.1
Cluster	HCCA: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00181410	EMB1989, RPB2,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
Adi_g018831	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Adi_g103384	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.04	OrthoFinder output from all 47 species
Ala_g21244	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Als_g02614	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Als_g03892	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Als_g07605	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.02	OrthoFinder output from all 47 species
Aob_g33991	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Azfi_s0114.g046098	DRD2, NRPE2,...	component *(NRPE2) of RNA polymerase V complex &...	0.02	OrthoFinder output from all 47 species
Ceric.05G021300.1	EMB1989, RPB2,...	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ceric.30G032600.1	NRPC2, Ceric.30G032600	component *(NRPC2) of RNA polymerase III complex &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000158.16	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020554.10	NRPC2	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre02.g075150	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Cre12.g542800	NRPC2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Dac_g06906	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Dcu_g09431	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g01687	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01020543001	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.06	OrthoFinder output from all 47 species
GSVIVT01036596001	NRPC2	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_05262	NRPC2	subunit 2 of Pol III RNA polymerase	0.03	OrthoFinder output from all 47 species
Gb_30006	EMB1989, RPB2, NRPB2	subunit 2 of Pol II RNA polymerase	0.04	OrthoFinder output from all 47 species
LOC_Os03g44484.1	EMB1989, RPB2,...	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum...	0.05	OrthoFinder output from all 47 species
LOC_Os04g54840.1	DRD2, NRPE2,...	subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V...	0.02	OrthoFinder output from all 47 species
Len_g16317	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Lfl_g12805	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
MA_10429035g0020	EMB1989, RPB2, NRPB2	subunit 2 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species
MA_342841g0010	NRPC2	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp4g21160.1	EMB1989, RPB2, NRPB2	subunit 2 of Pol II RNA polymerase	0.02	OrthoFinder output from all 47 species
Msp_g14155	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ore_g25703	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Pir_g54715	EMB1989, RPB2, NRPB2	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Pnu_g00855	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Ppi_g07591	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Ppi_g16479	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.03	OrthoFinder output from all 47 species
Sam_g16160	No alias	component *(NRPC2) of RNA polymerase III complex &...	0.02	OrthoFinder output from all 47 species
Sam_g26686	No alias	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Spa_g08100	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Zm00001e005007_P001	EMB1989, RPB2,...	subunit 2 of Pol II RNA polymerase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003724	RNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007642	RNA_pol_Rpb2_2	207	398
IPR007645	RNA_pol_Rpb2_3	471	535
IPR007646	RNA_pol_Rpb2_4	570	631
IPR007644	RNA_pol_bsu_protrusion	37	446
IPR007641	RNA_pol_Rpb2_7	1086	1177
IPR007120	DNA-dir_RNAP_su2_dom	714	1084
IPR007647	RNA_pol_Rpb2_5	656	707

External Links

No external refs found!

Solyc02g078260.3.1 (EMB1989, RPB2, NRPB2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation