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  5. Solyc02g071570.4.1

Solyc02g071570.4.1 (Solyc02g071570)


Aliases : Solyc02g071570

Description : Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana (sp|q2v3h0|pp322_arath : 305.0)


Gene families : OG0001686 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001686_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g071570.4.1

Target Alias Description ECC score Gene Family Method Actions
AT4G21190 emb1417 Pentatricopeptide repeat (PPR) superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g075351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25612 emb1417 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21409 emb1417 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10004 emb1417 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g33827 emb1417 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g01369 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g55290.2 emb1417, LOC_Os01g55290 Pentatricopeptide repeat-containing protein At4g21190... 0.03 OrthoFinder output from all 47 species
Nbi_g03572 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g09758 emb1417 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g42953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27530 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61353 emb1417 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09326 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17009 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e019767_P001 emb1417, Zm00001e019767 Pentatricopeptide repeat-containing protein At4g21190... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!