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  5. Solyc02g071530.2.1

Solyc02g071530.2.1 (Solyc02g071530)


Aliases : Solyc02g071530

Description : homologous recombination repair exonuclease (EXO1)


Gene families : OG0003251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003251_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g071530.2.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00265020 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.homologous... 0.08 OrthoFinder output from all 47 species
Adi_g115102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011947 No alias not classified & original description: CDS=18-1211 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000403.40 No alias DNA damage response.DNA repair mechanisms.homologous... 0.03 OrthoFinder output from all 47 species
Cre07.g353950 No alias DNA damage response.DNA repair mechanisms.homologous... 0.03 OrthoFinder output from all 47 species
Dac_g38690 No alias homologous recombination repair exonuclease *(EXO1) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01008397001 No alias DNA damage response.DNA repair mechanisms.homologous... 0.19 OrthoFinder output from all 47 species
GSVIVT01021316001 No alias DNA damage response.DNA repair mechanisms.homologous... 0.18 OrthoFinder output from all 47 species
Gb_08129 No alias homologous recombination repair exonuclease (EXO1) 0.01 OrthoFinder output from all 47 species
Gb_14686 No alias homologous recombination repair exonuclease (EXO1) 0.11 OrthoFinder output from all 47 species
LOC_Os01g56940.1 LOC_Os01g56940 homologous recombination repair exonuclease (EXO1) 0.04 OrthoFinder output from all 47 species
MA_10431686g0010 No alias homologous recombination repair exonuclease (EXO1) 0.07 OrthoFinder output from all 47 species
Msp_g36441 No alias homologous recombination repair exonuclease *(EXO1) &... 0.07 OrthoFinder output from all 47 species
Msp_g44441 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60144 No alias homologous recombination repair exonuclease *(EXO1) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014655 No alias homologous recombination repair exonuclease *(EXO1) &... 0.05 OrthoFinder output from all 47 species
Sam_g35172 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g51609 No alias homologous recombination repair exonuclease *(EXO1) &... 0.03 OrthoFinder output from all 47 species
Tin_g11001 No alias homologous recombination repair exonuclease *(EXO1) &... 0.07 OrthoFinder output from all 47 species
Zm00001e019645_P001 Zm00001e019645 homologous recombination repair exonuclease (EXO1) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006086 XPG-I_dom 140 226
IPR006085 XPG_DNA_repair_N 1 98
No external refs found!