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  5. Solyc02g070390.3.1

Solyc02g070390.3.1 (PTAC12, HMR, Solyc02g070390)


Aliases : PTAC12, HMR, Solyc02g070390

Description : PAP5/TAC12 cofactor of plastid-encoded RNA polymerase. transcriptional coactivator (HEMERA)


Gene families : OG0007916 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g070390.3.1
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AT2G34640 PTAC12, HMR plastid transcriptionally active 12 0.14 OrthoFinder output from all 47 species
Azfi_s0068.g036416 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.05 OrthoFinder output from all 47 species
Ceric.13G090100.1 PTAC12, HMR,... transcriptional coactivator *(HEMERA) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01021555001 PTAC12, HMR RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
Gb_08037 PTAC12, HMR PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.05 OrthoFinder output from all 47 species
LOC_Os01g56350.3 PTAC12, HMR,... PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.12 OrthoFinder output from all 47 species
MA_8815984g0010 PTAC12, HMR PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.02 OrthoFinder output from all 47 species
Mp1g24680.1 PTAC12, HMR PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.07 OrthoFinder output from all 47 species
Ore_g03883 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e019697_P001 PTAC12, HMR,... PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!