Solyc02g070240.3.1 (CPSF30, ATCPSF30,...)


Aliases : CPSF30, ATCPSF30, Solyc02g070240

Description : component CPSF30/Yth1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0003202 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003202_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g070240.3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00079840 CPSF30,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 OrthoFinder output from all 47 species
Ala_g15633 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ceric.29G075600.1 CPSF30,... component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Dcu_g33224 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ehy_g23212 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26119 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
GSVIVT01021617001 CPSF30, ATCPSF30 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
LOC_Os06g46400.1 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
MA_10428531g0010 CPSF30, ATCPSF30 component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.01 OrthoFinder output from all 47 species
Mp6g15200.1 CPSF30, ATCPSF30 component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ore_g30876 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Pir_g42075 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Spa_g05222 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007275 YTH_domain 250 384
No external refs found!