Solyc02g068730.3.1 (EMB3007, Solyc02g068730)

Aliases : EMB3007, Solyc02g068730

Description : subunit alpha of Cpn60 chaperonin complex. component CPN60a of CPN60 assembly chaperone complex. chaperone (Hsp60)

Gene families : OG0000688 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000688_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g068730.3.1
Cluster	HCCA: Cluster_77

Target	Alias	Description	ECC score	Gene Family Method
Aop_g06115	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0018.g014863	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: CDS=124-1707	0.02	OrthoFinder output from all 47 species
Azfi_s0872.g090686	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: CDS=1-1863	0.03	OrthoFinder output from all 47 species
Ceric.10G077900.1	CH-CPN60A,...	chaperone *(Hsp60) & original description:...	0.02	OrthoFinder output from all 47 species
Cre07.g339150	No alias	External stimuli response.temperature.Hsp...	0.01	OrthoFinder output from all 47 species
Dac_g15357	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g19819	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01010149001	No alias	External stimuli response.temperature.Hsp...	0.03	OrthoFinder output from all 47 species
GSVIVT01012098001	EMB3007	External stimuli response.temperature.Hsp...	0.03	OrthoFinder output from all 47 species
LOC_Os09g38980.1	EMB3007, LOC_Os09g38980	subunit alpha of Cpn60 chaperonin complex. component...	0.02	OrthoFinder output from all 47 species
Msp_g07896	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g08431	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.03	OrthoFinder output from all 47 species
Smo168153	CPN60B, LEN1	External stimuli response.temperature.Hsp...	0.02	OrthoFinder output from all 47 species
Spa_g38972	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/GroEL/TCP-1	65	567

External Links

No external refs found!

Solyc02g068730.3.1 (EMB3007, Solyc02g068730)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation