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  5. Solyc02g067570.3.1

Solyc02g067570.3.1 (SNL2, Solyc02g067570)


Aliases : SNL2, Solyc02g067570

Description : component SNL of histone deacetylase machineries


Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g067570.3.1
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AT1G10450 SNL6 SIN3-like 6 0.05 OrthoFinder output from all 47 species
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.12 OrthoFinder output from all 47 species
AT1G70060 SNL4 SIN3-like 4 0.06 OrthoFinder output from all 47 species
AT3G01320 SNL1 SIN3-like 1 0.1 OrthoFinder output from all 47 species
AT5G15020 SNL2 SIN3-like 2 0.17 OrthoFinder output from all 47 species
Adi_g013447 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Adi_g057345 SNL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058426 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Adi_g088432 SNL3, ATSIN3, SIN3 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g103364 SNL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117146 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Aev_g21851 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ala_g17667 SNL4 component *(SNL) of histone deacetylase machineries &... 0.09 OrthoFinder output from all 47 species
Ala_g21578 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.09 OrthoFinder output from all 47 species
Als_g18269 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Als_g19107 SNL2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g42067 SNL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g52097 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Aob_g27014 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.09 OrthoFinder output from all 47 species
Aob_g29157 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Aop_g00817 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene27809.t1 SNL4, Aspi01Gene27809 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene32665.t1 SNL4, Aspi01Gene32665 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene46934.t1 SNL3, ATSIN3,... component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene56982.t1 SNL3, ATSIN3,... component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Azfi_s0015.g014103 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Azfi_s0048.g030537 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Cba_g06817 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g16029 SNL4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g77516 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Ceric.02G103800.1 SNL4, Ceric.02G103800 component *(SNL) of histone deacetylase machineries &... 0.11 OrthoFinder output from all 47 species
Ceric.31G072300.1 SNL4, Ceric.31G072300 component *(SNL) of histone deacetylase machineries &... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.28 SNL3, ATSIN3, SIN3 Paired amphipathic helix protein Sin3-like 1... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021234.23 SNL5 Paired amphipathic helix protein Sin3-like 3... 0.02 OrthoFinder output from all 47 species
Cre03.g180800 SNL4 Paired amphipathic helix protein Sin3-like 4... 0.02 OrthoFinder output from all 47 species
Dcu_g18941 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Dcu_g18942 SNL4 component *(SNL) of histone deacetylase machineries &... 0.09 OrthoFinder output from all 47 species
Dde_g18720 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ehy_g07946 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ehy_g10035 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
GSVIVT01020136001 SNL3, ATSIN3, SIN3 Chromatin organisation.histone modifications.histone... 0.08 OrthoFinder output from all 47 species
GSVIVT01032579001 SNL2 Chromatin organisation.histone modifications.histone... 0.13 OrthoFinder output from all 47 species
Gb_35988 SNL4 component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
LOC_Os05g01020.2 SNL4, LOC_Os05g01020 component SNL of histone deacetylase machineries 0.11 OrthoFinder output from all 47 species
Len_g04844 SNL4 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Len_g20482 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Len_g58076 SNL4 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Lfl_g03500 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Lfl_g03517 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.09 OrthoFinder output from all 47 species
MA_18241g0010 SNL4 component SNL of histone deacetylase machineries 0.11 OrthoFinder output from all 47 species
MA_21090g0010 SNL2 Paired amphipathic helix protein Sin3-like 2... 0.02 OrthoFinder output from all 47 species
Mp3g02880.1 SNL4 component SNL of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
Mp7g11300.1 SNL5 Paired amphipathic helix protein Sin3-like 2... 0.03 OrthoFinder output from all 47 species
Msp_g06593 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Nbi_g03860 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ore_g28709 SNL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30140 SNL4 component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Ore_g30141 SNL2 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Ore_g35781 SNL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18041 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ppi_g09115 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0277.g027077 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Sam_g14557 No alias component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Sam_g25571 No alias component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Sam_g29972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15712 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Spa_g18268 SNL4 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Tin_g13041 SNL4 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Tin_g19320 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Zm00001e017111_P002 SNL4, Zm00001e017111 component SNL of histone deacetylase machineries 0.17 OrthoFinder output from all 47 species
Zm00001e025644_P001 SNL4, Zm00001e025644 component SNL of histone deacetylase machineries 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003822 PAH 157 201
IPR003822 PAH 72 116
IPR003822 PAH 358 400
IPR013194 HDAC_interact_dom 470 560
IPR031693 Sin3_C 1067 1314
No external refs found!