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  5. Solyc02g065510.1.1

Solyc02g065510.1.1 (Solyc02g065510)


Aliases : Solyc02g065510

Description : Pentatricopeptide repeat-containing protein At5g66631 OS=Arabidopsis thaliana (sp|b3h4p1|pp450_arath : 612.0)


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g065510.1.1
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00187020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g01390... 0.03 OrthoFinder output from all 47 species
AT2G01390 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g117048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g14119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G061400.1 Ceric.01G061400 not classified & original description: pacid=50592672... 0.04 OrthoFinder output from all 47 species
Ceric.03G036200.1 Ceric.03G036200 not classified & original description: pacid=50571952... 0.02 OrthoFinder output from all 47 species
Ceric.11G091600.1 Ceric.11G091600 not classified & original description: pacid=50596008... 0.04 OrthoFinder output from all 47 species
Ceric.16G010400.1 Ceric.16G010400 not classified & original description: pacid=50589761... 0.04 OrthoFinder output from all 47 species
Ceric.26G072600.1 EMB2750, Ceric.26G072600 not classified & original description: pacid=50599096... 0.05 OrthoFinder output from all 47 species
Dde_g07946 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09775 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g30615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19050 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019029001 No alias Pentatricopeptide repeat-containing protein At2g01390... 0.06 OrthoFinder output from all 47 species
GSVIVT01019040001 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species
Gb_36347 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.04 OrthoFinder output from all 47 species
Len_g17138 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05606 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_89328g0010 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.04 OrthoFinder output from all 47 species
Pir_g09735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017150 No alias not classified & original description: CDS=1-2094 0.03 OrthoFinder output from all 47 species
Sam_g13668 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25243 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11567 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g13511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 551 598
IPR002885 Pentatricopeptide_repeat 171 219
IPR002885 Pentatricopeptide_repeat 486 514
No external refs found!