Solyc02g050200.2.1 (BRCA2(V), BRCA2B,...)

Aliases : BRCA2(V), BRCA2B, ATBRCA2(V), Solyc02g050200

Description : DMC1-recombinase recruitment protein (BRCA2). component BRCA2 of BRCC DNA-damage response complex

Gene families : OG0007523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007523_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g050200.2.1
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00023p00030650	BRCA2(V),...	DNA damage response.BRCC DNA-damage response...	0.11	OrthoFinder output from all 47 species
AT4G00020	EDA20,...	BREAST CANCER 2 like 2A	0.17	OrthoFinder output from all 47 species
AT5G01630	BRCA2(V),...	BRCA2-like B	0.09	OrthoFinder output from all 47 species
Aop_g25648	BRCA2(V),...	component *(BRCA2) of regulatory BRCC deubiquination...	0.03	OrthoFinder output from all 47 species
Azfi_s0238.g059627	BRCA2(V),...	component *(BRCA2) of regulatory BRCC deubiquination...	0.06	OrthoFinder output from all 47 species
Ceric.07G096700.1	BRCA2(V),...	component *(BRCA2) of regulatory BRCC deubiquination...	0.04	OrthoFinder output from all 47 species
Cre13.g566900	No alias	DNA damage response.BRCC DNA-damage response...	0.06	OrthoFinder output from all 47 species
GSVIVT01030280001	BRCA2(V),...	DNA damage response.BRCC DNA-damage response...	0.15	OrthoFinder output from all 47 species
Gb_10450	BRCA2(V),...	DMC1-recombinase recruitment protein (BRCA2)	0.11	OrthoFinder output from all 47 species
LOC_Os01g07110.1	BRCA2(V),...	DMC1-recombinase recruitment protein (BRCA2). component...	0.06	OrthoFinder output from all 47 species
MA_91494g0010	BRCA2(V),...	DMC1-recombinase recruitment protein (BRCA2)	0.03	OrthoFinder output from all 47 species
Sam_g26572	No alias	component *(BRCA2) of regulatory BRCC deubiquination...	0.03	OrthoFinder output from all 47 species
Tin_g11489	BRCA2(V),...	component *(BRCA2) of regulatory BRCC deubiquination...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEA	Interproscan
BP	GO:0000725	recombinational repair	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015252	BRCA2_hlx	532	602
IPR002093	BRCA2_repeat	135	166
IPR002093	BRCA2_repeat	243	273
IPR015187	BRCA2_OB_1	606	732

External Links

No external refs found!

Solyc02g050200.2.1 (BRCA2(V), BRCA2B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation