1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g038750.3.1

Solyc02g038750.3.1 (Solyc02g038750)


Aliases : Solyc02g038750

Description : WD repeat-containing protein 55 OS=Arabidopsis thaliana (sp|o80775|wdr55_arath : 427.0)


Gene families : OG0005484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005484_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g038750.3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0531.g075826 No alias not classified & original description: CDS=125-1186 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000769.35 No alias WD repeat-containing protein 55 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g01003 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g46620.1 LOC_Os07g46620 WD repeat-containing protein 55 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Ore_g25321 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
CC GO:0090730 Las1 complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1902911 protein kinase complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 262 294
No external refs found!