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  5. Solyc02g030080.4.1

Solyc02g030080.4.1 (Solyc02g030080)


Aliases : Solyc02g030080

Description : no hits & (original description: none)


Gene families : OG0005121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g030080.4.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AT5G11240 No alias transducin family protein / WD-40 repeat family protein 0.04 OrthoFinder output from all 47 species
Adi_g017295 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07852 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47262 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g03965 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000123.23 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre12.g538500 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g02302 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_29253 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g46060.1 LOC_Os01g46060 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g13113 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp5g00060.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g17083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36919 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g02088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 463 556
IPR001680 WD40_repeat 188 226
IPR001680 WD40_repeat 11 33
No external refs found!