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  5. Solyc02g024070.3.1

Solyc02g024070.3.1 (PHB-1D, ATHB-14, PHB,...)


Aliases : PHB-1D, ATHB-14, PHB, ATHB14, Solyc02g024070

Description : transcription factor (HD-ZIP III)


Gene families : OG0000446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g024070.3.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00085520 ICU4, ATHB15,... RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
AMTR_s00148p00033940 PHB-1D, ATHB-14,... RNA biosynthesis.transcriptional activation.HB... 0.07 OrthoFinder output from all 47 species
AMTR_s00155p00069240 PHB-1D, ATHB-14,... RNA biosynthesis.transcriptional activation.HB... 0.09 OrthoFinder output from all 47 species
AT2G34710 PHB-1D, ATHB-14,... Homeobox-leucine zipper family protein / lipid-binding... 0.04 OrthoFinder output from all 47 species
AT5G60690 IFL1, IFL, REV Homeobox-leucine zipper family protein / lipid-binding... 0.04 OrthoFinder output from all 47 species
Adi_g089464 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g11869 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g36023 PHB-1D, ATHB-14,... transcriptional co-regulator *(ZPR) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37323 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25553 PHB-1D, ATHB-14,... transcriptional co-regulator *(ZPR) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06579 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g27486 ICU4, ATHB15,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33686 PHB-1D, ATHB-14,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39406 PHB-1D, ATHB-14,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50584 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g20866 PHB-1D, ATHB-14,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22190 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0047.g030268 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0250.g060252 PHB-1D, ATHB-14,... transcriptional co-regulator *(ZPR) & original... 0.04 OrthoFinder output from all 47 species
Cba_g06986 HB-8, ATHB8, ATHB-8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g23262 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g28120 PHB-1D, ATHB-14,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g43894 HB-8, ATHB8, ATHB-8 HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G020900.1 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original... 0.08 OrthoFinder output from all 47 species
Ceric.18G068400.1 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.23G045900.1 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original... 0.02 OrthoFinder output from all 47 species
Dac_g09166 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g12691 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11576 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47759 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07882 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01021625001 PHB-1D, ATHB-14,... RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
Gb_10259 ICU4, ATHB15,... transcription factor (HD-ZIP III) 0.02 OrthoFinder output from all 47 species
LOC_Os03g43930.1 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.08 OrthoFinder output from all 47 species
LOC_Os12g41860.1 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.08 OrthoFinder output from all 47 species
Len_g19005 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Len_g30347 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10862 ICU4, ATHB15,... transcriptional co-regulator *(ZPR) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g26487 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Mp1g24140.1 HB-8, ATHB8, ATHB-8 transcription factor (HD-ZIP III) 0.05 OrthoFinder output from all 47 species
Msp_g26097 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05442 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g28374 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02329 ICU4, ATHB15,... HD-ZIP III-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006549 ICU4, ATHB15,... not classified & original description: CDS=1-489 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021492 HB-8, ATHB8, ATHB-8 not classified & original description: CDS=1-1650 0.05 OrthoFinder output from all 47 species
Sam_g08077 No alias transcriptional co-regulator *(ZPR) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08842 No alias transcriptional co-regulator *(ZPR) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08843 No alias transcriptional co-regulator *(ZPR) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g10819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12564 No alias HD-ZIP III-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g39110 No alias HD-ZIP III-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc08g066500.4.1 ICU4, ATHB15,... transcription factor (HD-ZIP III) 0.03 OrthoFinder output from all 47 species
Zm00001e000073_P001 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.06 OrthoFinder output from all 47 species
Zm00001e004553_P004 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.05 OrthoFinder output from all 47 species
Zm00001e005034_P001 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.05 OrthoFinder output from all 47 species
Zm00001e012408_P002 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.04 OrthoFinder output from all 47 species
Zm00001e018118_P002 PHB-1D, ATHB-14,... transcription factor (HD-ZIP III) 0.06 OrthoFinder output from all 47 species
Zm00001e039093_P002 IFL1, IFL, REV,... transcription factor (HD-ZIP III) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008289 lipid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 170 377
IPR013978 MEKHLA 706 850
IPR001356 Homeobox_dom 22 80
No external refs found!