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  5. Solyc02g021760.3.1

Solyc02g021760.3.1 (CPSF30, ATCPSF30,...)


Aliases : CPSF30, ATCPSF30, Solyc02g021760

Description : component CPSF30/Yth1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0003202 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003202_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g021760.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00079840 CPSF30,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 OrthoFinder output from all 47 species
Ala_g15633 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Als_g21038 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.29G075600.1 CPSF30,... component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Dcu_g33224 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ehy_g23212 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26119 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
GSVIVT01021617001 CPSF30, ATCPSF30 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 OrthoFinder output from all 47 species
Gb_34616 CPSF30, ATCPSF30 component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
LOC_Os06g46400.1 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Len_g00735 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
MA_61605g0010 CPSF30, ATCPSF30 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp6g15200.1 CPSF30, ATCPSF30 component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ore_g30876 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Pir_g42075 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Pnu_g13598 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017792 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Sam_g17308 No alias component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Spa_g05222 CPSF30, ATCPSF30 component *(CPSF30/Yth1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Zm00001e012971_P001 CPSF30,... component CPSF30/Yth1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR007275 YTH_domain 258 392
No external refs found!