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  5. Solyc02g021360.3.1

Solyc02g021360.3.1 (Solyc02g021360)


Aliases : Solyc02g021360

Description : regulatory component of Katanin ATP-dependent microtubule severing complex


Gene families : OG0003183 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g021360.3.1

Target Alias Description ECC score Gene Family Method Actions
AT5G08390 No alias Transducin/WD40 repeat-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G23430 No alias Transducin/WD40 repeat-like superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g022438 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.04 OrthoFinder output from all 47 species
Aev_g38939 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.03 OrthoFinder output from all 47 species
Ala_g13485 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010636 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.03 OrthoFinder output from all 47 species
Cba_g21808 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.02 OrthoFinder output from all 47 species
Cba_g36139 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.02 OrthoFinder output from all 47 species
Cre03.g160450 No alias Cell cycle.cytokinesis.phragmoplast disassembly.Katanin... 0.03 OrthoFinder output from all 47 species
Dcu_g27771 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.04 OrthoFinder output from all 47 species
GSVIVT01034331001 No alias Cell cycle.cytokinesis.phragmoplast disassembly.Katanin... 0.06 OrthoFinder output from all 47 species
Gb_06352 No alias regulatory component of Katanin ATP-dependent... 0.03 OrthoFinder output from all 47 species
MA_12868g0010 No alias regulatory component of Katanin ATP-dependent... 0.05 OrthoFinder output from all 47 species
MA_97731g0010 No alias regulatory component of Katanin ATP-dependent... 0.04 OrthoFinder output from all 47 species
Mp3g07080.1 No alias regulatory component of Katanin ATP-dependent... 0.04 OrthoFinder output from all 47 species
Msp_g13864 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.06 OrthoFinder output from all 47 species
Smo442850 No alias Cell cycle.cytokinesis.phragmoplast disassembly.Katanin... 0.06 OrthoFinder output from all 47 species
Solyc04g008720.4.1 Solyc04g008720 regulatory component of Katanin ATP-dependent... 0.04 OrthoFinder output from all 47 species
Zm00001e006531_P001 Zm00001e006531 regulatory component of Katanin ATP-dependent... 0.03 OrthoFinder output from all 47 species
Zm00001e041938_P001 Zm00001e041938 regulatory component of Katanin ATP-dependent... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 136 172
IPR001680 WD40_repeat 53 88
IPR001680 WD40_repeat 94 130
IPR001680 WD40_repeat 176 214
IPR001680 WD40_repeat 10 45
IPR028021 Katanin_C-terminal 637 794
No external refs found!